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| | ==Crystal structure of yeast calmodulin bound to the C-terminal fragment of spindle pole body protein Spc110== | | ==Crystal structure of yeast calmodulin bound to the C-terminal fragment of spindle pole body protein Spc110== |
| - | <StructureSection load='4ds7' size='340' side='right' caption='[[4ds7]], [[Resolution|resolution]] 2.15Å' scene=''> | + | <StructureSection load='4ds7' size='340' side='right'caption='[[4ds7]], [[Resolution|resolution]] 2.15Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4ds7]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Baker's_yeast Baker's yeast] and [http://en.wikipedia.org/wiki/Candida_sphaerica Candida sphaerica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DS7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DS7 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4ds7]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Kluyveromyces_lactis_NRRL_Y-1140 Kluyveromyces lactis NRRL Y-1140] and [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DS7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DS7 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=SR:STRONTIUM+ION'>SR</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1lkj|1lkj]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=SR:STRONTIUM+ION'>SR</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CMD1, KLLA0B09427g ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=284590 Candida sphaerica]), SPC110, NUF1, XCM1, YDR356W, D9476.3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Baker's yeast])</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ds7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ds7 OCA], [https://pdbe.org/4ds7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ds7 RCSB], [https://www.ebi.ac.uk/pdbsum/4ds7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ds7 ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ds7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ds7 OCA], [http://pdbe.org/4ds7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ds7 RCSB], [http://www.ebi.ac.uk/pdbsum/4ds7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ds7 ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/CALM_KLULA CALM_KLULA]] Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases. [[http://www.uniprot.org/uniprot/SP110_YEAST SP110_YEAST]] Component of the spindle pole body (SPB) required for the proper execution of spindle pole body (SPB) duplication. Potential role in cross-linking filaments or anchoring other molecules. It is essential for growth.<ref>PMID:10339566</ref> <ref>PMID:11278681</ref> <ref>PMID:1541631</ref> <ref>PMID:17213332</ref> <ref>PMID:7503995</ref> <ref>PMID:9384578</ref> | + | [https://www.uniprot.org/uniprot/CALM_KLULA CALM_KLULA] Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases. |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | ==See Also== | | ==See Also== |
| - | *[[Calmodulin|Calmodulin]] | + | *[[Calmodulin 3D structures|Calmodulin 3D structures]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Baker's yeast]] | + | [[Category: Kluyveromyces lactis NRRL Y-1140]] |
| - | [[Category: Candida sphaerica]] | + | [[Category: Large Structures]] |
| - | [[Category: Klenchin, V A]] | + | [[Category: Saccharomyces cerevisiae S288C]] |
| - | [[Category: Rayment, I]] | + | [[Category: Klenchin VA]] |
| - | [[Category: Metal binding]] | + | [[Category: Rayment I]] |
| - | [[Category: Protein binding]]
| + | |
| - | [[Category: Spindle pole body]]
| + | |
| - | [[Category: Structural protein]]
| + | |
| Structural highlights
Function
CALM_KLULA Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases.
Publication Abstract from PubMed
Microtubule organizing centers (MTOCs) form, anchor and stabilize the polarized network of microtubules in a cell. The central MTOC is the centrosome that duplicates during the cell cycle and during mitosis assembles a bipolar spindle to capture and segregate sister chromatids. Yet, despite their importance in cell biology, the physical structure of MTOCs is poorly understood. Here we determine the molecular architecture of the core of the yeast spindle pole body (SPB) by Bayesian integrative structure modeling based on in vivo FRET, small-angle X-ray scattering (SAXS), X-ray crystallography, electron microscopy and two-hybrid analysis. The model is validated by several methods that include a genetic analysis of the conserved PACT domain that recruits Spc110, a protein related to pericentrin, to the SPB. The model suggests that calmodulin can act as a protein cross-linker and Spc29 is an extended, flexible protein. The model led to the identification of a single, essential heptad in the coiled coil of Spc110 and a minimal PACT domain. It also led to a proposed pathway for the integration of Spc110 into the SPB.
The molecular architecture of the yeast spindle pole body core determined by Bayesian integrative modeling.,Viswanath S, Bonomi M, Kim SJ, Klenchin VA, Taylor KC, Yabut KC, Umbreit NT, Van Epps HA, Meehl J, Jones MH, Russel D, Velazquez-Muriel JA, Winey M, Rayment I, Davis TN, Sali A, Muller EG Mol Biol Cell. 2017 Aug 16. pii: mbc.E17-06-0397. doi: 10.1091/mbc.E17-06-0397. PMID:28814505[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Viswanath S, Bonomi M, Kim SJ, Klenchin VA, Taylor KC, Yabut KC, Umbreit NT, Van Epps HA, Meehl J, Jones MH, Russel D, Velazquez-Muriel JA, Winey M, Rayment I, Davis TN, Sali A, Muller EG. The molecular architecture of the yeast spindle pole body core determined by Bayesian integrative modeling. Mol Biol Cell. 2017 Aug 16. pii: mbc.E17-06-0397. doi: 10.1091/mbc.E17-06-0397. PMID:28814505 doi:http://dx.doi.org/10.1091/mbc.E17-06-0397
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