|  |   | 
		| (One intermediate revision not shown.) | 
| Line 1: | Line 1: | 
|  |  |  |  | 
|  | ==Crystal structure of Casein kinase I homolog 1== |  | ==Crystal structure of Casein kinase I homolog 1== | 
| - | <StructureSection load='5x18' size='340' side='right' caption='[[5x18]], [[Resolution|resolution]] 1.80Å' scene=''> | + | <StructureSection load='5x18' size='340' side='right'caption='[[5x18]], [[Resolution|resolution]] 1.80Å' scene=''> | 
|  | == Structural highlights == |  | == Structural highlights == | 
| - | <table><tr><td colspan='2'>[[5x18]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X18 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5X18 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5x18]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X18 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5X18 FirstGlance]. <br> | 
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>,<scene name='pdbligand=MLA:MALONIC+ACID'>MLA</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr> | 
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5x17|5x17]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MLA:MALONIC+ACID'>MLA</scene></td></tr> | 
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Non-specific_serine/threonine_protein_kinase Non-specific serine/threonine protein kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.11.1 2.7.11.1] </span></td></tr>
 | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5x18 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x18 OCA], [https://pdbe.org/5x18 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5x18 RCSB], [https://www.ebi.ac.uk/pdbsum/5x18 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5x18 ProSAT]</span></td></tr> | 
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5x18 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x18 OCA], [http://pdbe.org/5x18 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5x18 RCSB], [http://www.ebi.ac.uk/pdbsum/5x18 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5x18 ProSAT]</span></td></tr> | + |  | 
|  | </table> |  | </table> | 
|  | == Function == |  | == Function == | 
| - | [[http://www.uniprot.org/uniprot/KC11_YEAST KC11_YEAST]] Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.<ref>PMID:10866691</ref>  | + | [https://www.uniprot.org/uniprot/KC11_YEAST KC11_YEAST] Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.<ref>PMID:10866691</ref>  | 
|  | <div style="background-color:#fffaf0;"> |  | <div style="background-color:#fffaf0;"> | 
|  | == Publication Abstract from PubMed == |  | == Publication Abstract from PubMed == | 
| Line 24: | Line 23: | 
|  | __TOC__ |  | __TOC__ | 
|  | </StructureSection> |  | </StructureSection> | 
| - | [[Category: Non-specific serine/threonine protein kinase]] | + | [[Category: Large Structures]] | 
| - | [[Category: Kikuchi, M]] | + | [[Category: Saccharomyces cerevisiae S288C]] | 
| - | [[Category: Shinohara, Y]] | + | [[Category: Kikuchi M]] | 
| - | [[Category: Ueda, H R]] | + | [[Category: Shinohara Y]] | 
| - | [[Category: Umehara, T]] | + | [[Category: Ueda HR]] | 
| - | [[Category: Casein kinase i homolog 1]]
 | + | [[Category: Umehara T]] | 
| - | [[Category: Kinase]]
 | + |  | 
| - | [[Category: Transferase]]
 | + |  | 
|  |   Structural highlights   Function KC11_YEAST Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.[1] 
 
  Publication Abstract from PubMed Temperature compensation is a striking feature of the circadian clock. Here we investigate biochemical mechanisms underlying temperature-compensated, CKIdelta-dependent multi-site phosphorylation in mammals. We identify two mechanisms for temperature-insensitive phosphorylation at higher temperature: lower substrate affinity to CKIdelta-ATP complex and higher product affinity to CKIdelta-ADP complex. Inhibitor screening of ADP-dependent phosphatase activity of CKIdelta identified aurintricarboxylic acid (ATA) as a temperature-sensitive kinase activator. Docking simulation of ATA and mutagenesis experiment revealed K224D/K224E mutations in CKIdelta that impaired product binding and temperature-compensated primed phosphorylation. Importantly, K224D mutation shortens behavioral circadian rhythms and changes the temperature dependency of SCN's circadian period. Interestingly, temperature-compensated phosphorylation was evolutionary conserved in yeast. Molecular dynamics simulation and X-ray crystallography demonstrate that an evolutionally conserved CKI-specific domain around K224 can provide a structural basis for temperature-sensitive substrate and product binding. Surprisingly, this domain can confer temperature compensation on a temperature-sensitive TTBK1. These findings suggest the temperature-sensitive substrate- and product-binding mechanisms underlie temperature compensation.
 Temperature-Sensitive Substrate and Product Binding Underlie Temperature-Compensated Phosphorylation in the Clock.,Shinohara Y, Koyama YM, Ukai-Tadenuma M, Hirokawa T, Kikuchi M, Yamada RG, Ukai H, Fujishima H, Umehara T, Tainaka K, Ueda HR Mol Cell. 2017 Sep 7;67(5):783-798.e20. doi: 10.1016/j.molcel.2017.08.009. PMID:28886336[2]
 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
   References ↑ Feng Y, Davis NG. Akr1p and the type I casein kinases act prior to the ubiquitination step of yeast endocytosis: Akr1p is required for kinase localization to the plasma membrane. Mol Cell Biol. 2000 Jul;20(14):5350-9. PMID:10866691 ↑ Shinohara Y, Koyama YM, Ukai-Tadenuma M, Hirokawa T, Kikuchi M, Yamada RG, Ukai H, Fujishima H, Umehara T, Tainaka K, Ueda HR. Temperature-Sensitive Substrate and Product Binding Underlie Temperature-Compensated Phosphorylation in the Clock. Mol Cell. 2017 Sep 7;67(5):783-798.e20. doi: 10.1016/j.molcel.2017.08.009. PMID:28886336 doi:http://dx.doi.org/10.1016/j.molcel.2017.08.009
 
 |