This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1j0p

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:13, 25 October 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Three dimensional Structure of the Y43L mutant of Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F==
==Three dimensional Structure of the Y43L mutant of Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F==
-
<StructureSection load='1j0p' size='340' side='right' caption='[[1j0p]], [[Resolution|resolution]] 0.91&Aring;' scene=''>
+
<StructureSection load='1j0p' size='340' side='right'caption='[[1j0p]], [[Resolution|resolution]] 0.91&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1j0p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_29579 Atcc 29579]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J0P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1J0P FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1j0p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J0P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1J0P FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EOH:ETHANOL'>EOH</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 0.91&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2cdv|2cdv]], [[1j0o|1j0o]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EOH:ETHANOL'>EOH</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1j0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j0p OCA], [http://pdbe.org/1j0p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1j0p RCSB], [http://www.ebi.ac.uk/pdbsum/1j0p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1j0p ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1j0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j0p OCA], [https://pdbe.org/1j0p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1j0p RCSB], [https://www.ebi.ac.uk/pdbsum/1j0p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1j0p ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/CYC3_DESVM CYC3_DESVM]] Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin.
+
[https://www.uniprot.org/uniprot/CYC3_DESVM CYC3_DESVM] Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j0/1j0p_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j0/1j0p_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 31: Line 31:
==See Also==
==See Also==
-
*[[Cytochrome c|Cytochrome c]]
+
*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 29579]]
+
[[Category: Desulfovibrio vulgaris]]
-
[[Category: Akutsu, H]]
+
[[Category: Large Structures]]
-
[[Category: Cusanvich, M A]]
+
[[Category: Akutsu H]]
-
[[Category: Higuchi, Y]]
+
[[Category: Cusanvich MA]]
-
[[Category: Kumagai, J]]
+
[[Category: Higuchi Y]]
-
[[Category: Ogata, H]]
+
[[Category: Kumagai J]]
-
[[Category: Ohmura, T]]
+
[[Category: Ogata H]]
-
[[Category: Ozawa, K]]
+
[[Category: Ohmura T]]
-
[[Category: Tomimoto, Y]]
+
[[Category: Ozawa K]]
-
[[Category: Yasukawa, F]]
+
[[Category: Tomimoto Y]]
-
[[Category: Electron transport]]
+
[[Category: Yasukawa F]]
-
[[Category: High resolution x-ray structure]]
+
-
[[Category: Tetraheme cytochrome c3]]
+
-
[[Category: Y43l mutant]]
+

Current revision

Three dimensional Structure of the Y43L mutant of Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F

PDB ID 1j0p

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools