5v4y

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:41, 4 October 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==X-ray crystal structure of wild type HIV-1 protease in complex with GRL-09510==
==X-ray crystal structure of wild type HIV-1 protease in complex with GRL-09510==
-
<StructureSection load='5v4y' size='340' side='right' caption='[[5v4y]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='5v4y' size='340' side='right'caption='[[5v4y]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5v4y]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V4Y OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5V4Y FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5v4y]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V4Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5V4Y FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8FM:(3S,3AR,5R,7AS,8S)-HEXAHYDRO-4H-3,5-METHANOFURO[2,3-B]PYRAN-8-YL+[(2S,3R)-3-HYDROXY-4-{[(4-METHOXYPHENYL)SULFONYL](2-METHYLPROPYL)AMINO}-1-PHENYLBUTAN-2-YL]CARBAMATE'>8FM</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5v4y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v4y OCA], [http://pdbe.org/5v4y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5v4y RCSB], [http://www.ebi.ac.uk/pdbsum/5v4y PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5v4y ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8FM:(3S,3AR,5R,7AS,8S)-HEXAHYDRO-4H-3,5-METHANOFURO[2,3-B]PYRAN-8-YL+[(2S,3R)-3-HYDROXY-4-{[(4-METHOXYPHENYL)SULFONYL](2-METHYLPROPYL)AMINO}-1-PHENYLBUTAN-2-YL]CARBAMATE'>8FM</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5v4y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v4y OCA], [https://pdbe.org/5v4y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5v4y RCSB], [https://www.ebi.ac.uk/pdbsum/5v4y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5v4y ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q72874_9HIV1 Q72874_9HIV1]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
We report that GRL-09510, a novel HIV-1 protease inhibitor (PI) containing a newly-generated P2-crown-tetrahydrofuranylurethane (Crwn-THF), a P2'-methoxybenzene, and a sulfonamide isostere, is highly active against laboratory and primary clinical HIV-1 isolates (EC50: 0.0014-0.0028 muM) with minimal cytotoxicity (CC50: 39.0 muM). Similarly, GRL-09510 efficiently blocked the replication of HIV-1NL4-3 variants, which were capable of propagating at high-concentrations of atazanavir, lopinavir, and amprenavir (APV). GRL-09510 was also potent against multi-drug-resistant clinical HIV-1 variants and HIV-2ROD. Under the selection condition, where HIV-1NL4-3 rapidly acquired significant resistance to APV, an integrase inhibitor raltegravir, and a GRL-09510 congener (GRL-09610), no variants highly resistant against GRL-09510 emerged over long-term in vitro passage of the virus. Crystallographic analysis demonstrated that the Crwn-THF moiety of GRL-09510 forms strong hydrogen-bond-interactions with HIV-1 protease (PR) active-site amino acids and is bulkier with a larger contact surface, making greater van der Waals contacts with PR than the bis-THF moiety of darunavir. The present data demonstrate that GRL-09510 has favorable features for treating patients infected with wild-type and/or multi-drug-resistant HIV-1 variants, that the newly generated P2-Crwn-THF moiety confers highly desirable anti-HIV-1 potency. The use of the novel Crwn-THF moiety sheds lights in the design of novel PIs.
 +
 +
GRL-09510, a Unique P2-Crown-Tetrahydrofuranylurethane -Containing HIV-1 Protease Inhibitor, Maintains Its Favorable Antiviral Activity against Highly-Drug-Resistant HIV-1 Variants in vitro.,Amano M, Miguel Salcedo-Gomez P, Yedidi RS, Delino NS, Nakata H, Venkateswara Rao K, Ghosh AK, Mitsuya H Sci Rep. 2017 Sep 25;7(1):12235. doi: 10.1038/s41598-017-12052-9. PMID:28947797<ref>PMID:28947797</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 5v4y" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Das, D]]
+
[[Category: Human immunodeficiency virus 1]]
-
[[Category: Delino, N S]]
+
[[Category: Large Structures]]
-
[[Category: Ghosh, A K]]
+
[[Category: Das D]]
-
[[Category: Kaufman, J D]]
+
[[Category: Delino NS]]
-
[[Category: Mitsuya, H]]
+
[[Category: Ghosh AK]]
-
[[Category: Wingfield, P T]]
+
[[Category: Kaufman JD]]
-
[[Category: Yedidi, R S]]
+
[[Category: Mitsuya H]]
-
[[Category: Crown-thf]]
+
[[Category: Wingfield PT]]
-
[[Category: Furan]]
+
[[Category: Yedidi RS]]
-
[[Category: Grl-09510]]
+
-
[[Category: Hiv-1 protease]]
+
-
[[Category: Hydrolase-hydrolase inhibitor complex]]
+
-
[[Category: Nonpeptidic]]
+
-
[[Category: Protease-inhibitor]]
+
-
[[Category: Pyran]]
+

Current revision

X-ray crystal structure of wild type HIV-1 protease in complex with GRL-09510

PDB ID 5v4y

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools