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1yby

From Proteopedia

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Conserved hypothetical protein Cth-95 from Clostridium thermocellum

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Retrieved from "http://52.214.119.220/wiki/index.php/1yby"

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-[[Image:1yby.gif|left|200px]]
- {{Structure
+==Conserved hypothetical protein Cth-95 from Clostridium thermocellum==
-|PDB= 1yby |SIZE=350|CAPTION= <scene name='initialview01'>1yby</scene>, resolution 1.950&Aring;
+<StructureSection load='1yby' size='340' side='right'caption='[[1yby]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene>
+<table><tr><td colspan='2'>[[1yby]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acetivibrio_thermocellus Acetivibrio thermocellus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YBY FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-|GENE=
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
-|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam01132 EFP], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam08207 EFP_N], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK00529 PRK00529], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam09285 Elong-fact-P_C]</span>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yby FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yby OCA], [https://pdbe.org/1yby PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yby RCSB], [https://www.ebi.ac.uk/pdbsum/1yby PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yby ProSAT], [https://www.topsan.org/Proteins/SECSG/1yby TOPSAN]</span></td></tr>
-|RELATEDENTRY=
+</table>
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yby FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yby OCA], [http://www.ebi.ac.uk/pdbsum/1yby PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1yby RCSB]</span>
+== Function ==
-}}
+[https://www.uniprot.org/uniprot/EFP_ACET2 EFP_ACET2] Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.[HAMAP-Rule:MF_00141]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yb/1yby_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yby ConSurf].
+<div style="clear:both"></div>
-'''Conserved hypothetical protein Cth-95 from Clostridium thermocellum'''
+==See Also==
+*[[Elongation factor 3D structures|Elongation factor 3D structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-YBY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Clostridium_thermocellum Clostridium thermocellum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBY OCA].
+[[Category: Acetivibrio thermocellus]]
-[[Category: Clostridium thermocellum]]
+[[Category: Large Structures]]
-[[Category: Single protein]]
+[[Category: Chang J]]
-[[Category: Chang, J.]]
+[[Category: Chang S-H]]
-[[Category: Chang, S H.]]
+[[Category: Chen L]]
-[[Category: Chen, L.]]
+[[Category: Florence Q]]
-[[Category: Florence, Q.]]
+[[Category: Habel J]]
-[[Category: Habel, J.]]
+[[Category: Horanyi P]]
-[[Category: Horanyi, P.]]
+[[Category: Kataeva I]]
-[[Category: Kataeva, I.]]
+[[Category: Lee D]]
-[[Category: Lee, D.]]
+[[Category: Lin D]]
-[[Category: Lin, D.]]
+[[Category: Liu Z-J]]
-[[Category: Liu, Z J.]]
+[[Category: Ljundahl L]]
-[[Category: Ljundahl, L.]]
+[[Category: Nguyen J]]
-[[Category: Nguyen, J.]]
+[[Category: Rose J]]
-[[Category: Rose, J.]]
+[[Category: Tempel W]]
-[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
+[[Category: Wang B-C]]
-[[Category: Tempel, W.]]
+[[Category: Xu H]]
-[[Category: Wang, B C.]]
+[[Category: Zhang H]]
-[[Category: Xu, H.]]
+[[Category: Zhao M]]
-[[Category: Zhang, H.]]
+[[Category: Zhou W]]
-[[Category: Zhao, M.]]
-[[Category: Zhou, W.]]
-[[Category: clostridium thermocellum]]
-[[Category: conserved hypothetical protein]]
-[[Category: protein structure initiative]]
-[[Category: psi]]
-[[Category: secsg]]
-[[Category: southeast collaboratory for structural genomic]]
-[[Category: structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:02:24 2008''

1yby

From Proteopedia

Current revision

Conserved hypothetical protein Cth-95 from Clostridium thermocellum

Structural highlights

Function

Evolutionary Conservation

See Also

Contents

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