This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1tp8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:32, 23 August 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==CRYSTAL STRUCTURE OF A GALACTOSE SPECIFIC LECTIN FROM ARTOCARPUS HIRSUTA IN COMPLEX WITH METHYL-a-D-GALACTOSE==
==CRYSTAL STRUCTURE OF A GALACTOSE SPECIFIC LECTIN FROM ARTOCARPUS HIRSUTA IN COMPLEX WITH METHYL-a-D-GALACTOSE==
-
<StructureSection load='1tp8' size='340' side='right' caption='[[1tp8]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
+
<StructureSection load='1tp8' size='340' side='right'caption='[[1tp8]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1tp8]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Artocarpus_hirsuta Artocarpus hirsuta]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TP8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TP8 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1tp8]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Artocarpus_hirsutus Artocarpus hirsutus] and [https://en.wikipedia.org/wiki/Artocarpus_integer Artocarpus integer]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TP8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TP8 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AMG:ALPHA-METHYL-D-GALACTOSIDE'>AMG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1toq|1toq]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMG:ALPHA-METHYL-D-GALACTOSIDE'>AMG</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tp8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tp8 OCA], [http://pdbe.org/1tp8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tp8 RCSB], [http://www.ebi.ac.uk/pdbsum/1tp8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1tp8 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tp8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tp8 OCA], [https://pdbe.org/1tp8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1tp8 RCSB], [https://www.ebi.ac.uk/pdbsum/1tp8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tp8 ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/LECA_ARTIN LECA_ARTIN] D-galactose-specific lectin, binds the T-antigen structure Gal-beta1,3-GalNAc (Thomsen-Friedenreich-antigen-specific lectin). Potent and selective stimulant of distinct T- and B-cell functions. Shows a unique ability to specifically recognize IgA-1 from human serum.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tp/1tp8_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tp/1tp8_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 29: Line 31:
==See Also==
==See Also==
-
*[[Agglutinin|Agglutinin]]
+
*[[Agglutinin 3D structures|Agglutinin 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Artocarpus hirsuta]]
+
[[Category: Artocarpus hirsutus]]
-
[[Category: Gaikwad, S M]]
+
[[Category: Artocarpus integer]]
-
[[Category: Katre, U V]]
+
[[Category: Large Structures]]
-
[[Category: Khan, M I]]
+
[[Category: Gaikwad SM]]
-
[[Category: Rao, K N]]
+
[[Category: Katre UV]]
-
[[Category: Suresh, C G]]
+
[[Category: Khan MI]]
-
[[Category: Prism i fold]]
+
[[Category: Rao KN]]
-
[[Category: Carbohydrate specificity]]
+
[[Category: Suresh CG]]
-
[[Category: Jacalin family]]
+
-
[[Category: Methyl--d-galactose]]
+
-
[[Category: Moraceae plant lectin]]
+
-
[[Category: Post-translational modification]]
+
-
[[Category: Sugar binding protein]]
+
-
[[Category: Three-dimensional structure]]
+

Current revision

CRYSTAL STRUCTURE OF A GALACTOSE SPECIFIC LECTIN FROM ARTOCARPUS HIRSUTA IN COMPLEX WITH METHYL-a-D-GALACTOSE

PDB ID 1tp8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools