2a3m

From Proteopedia

(Difference between revisions)

Current revision

Structure of Desulfovibrio desulfuricans G20 tetraheme cytochrome (oxidized form)

Structural highlights

2a3m is a 1 chain structure with sequence from Oleidesulfovibrio alaskensis G20. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 1.5Å
Ligands:
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q30WH0_OLEA2

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

The structure of the type I tetraheme cytochrome c(3) from Desulfovibrio desulfuricans G20 was determined to 1.5 Angstrom by X-ray crystallography. In addition to the oxidized form, the structure of the molybdate-bound form of the protein was determined from oxidized crystals soaked in sodium molybdate. Only small structural shifts were obtained with metal binding, consistent with the remarkable structural stability of this protein. In vitro experiments with pure cytochrome showed that molybdate could oxidize the reduced cytochrome, although not as rapidly as U(VI) present as uranyl acetate. Alterations in the overall conformation and thermostability of the metal-oxidized protein were investigated by circular dichroism studies. Again, only small changes in protein structure were documented. The location of the molybdate ion near heme IV in the crystal structure suggested heme IV as the site of electron exit from the reduced cytochrome and implicated Lys14 and Lys56 in binding. Analysis of structurally conserved water molecules in type I cytochrome c(3) crystal structures identified interactions predicted to be important for protein stability and possibly for intramolecular electron transfer among heme molecules.

Desulfovibrio desulfuricans G20 tetraheme cytochrome structure at 1.5 Angstrom and cytochrome interaction with metal complexes.,Pattarkine MV, Tanner JJ, Bottoms CA, Lee YH, Wall JD J Mol Biol. 2006 May 19;358(5):1314-27. Epub 2006 Mar 23. PMID:16580681^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Pattarkine MV, Tanner JJ, Bottoms CA, Lee YH, Wall JD. Desulfovibrio desulfuricans G20 tetraheme cytochrome structure at 1.5 Angstrom and cytochrome interaction with metal complexes. J Mol Biol. 2006 May 19;358(5):1314-27. Epub 2006 Mar 23. PMID:16580681 doi:10.1016/j.jmb.2006.03.010

1 Structural highlights
2 Function
3 Evolutionary Conservation
4 Publication Abstract from PubMed
5 See Also
6 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2a3m"

@@ Line 1: / Line 1: @@
 ==Structure of Desulfovibrio desulfuricans G20 tetraheme cytochrome (oxidized form)==
-<StructureSection load='2a3m' size='340' side='right' caption='[[2a3m]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
+<StructureSection load='2a3m' size='340' side='right'caption='[[2a3m]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2a3m]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desdg Desdg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A3M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A3M FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2a3m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Oleidesulfovibrio_alaskensis_G20 Oleidesulfovibrio alaskensis G20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A3M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2A3M FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a3m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a3m OCA], [http://pdbe.org/2a3m PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2a3m RCSB], [http://www.ebi.ac.uk/pdbsum/2a3m PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2a3m ProSAT]</span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2a3m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a3m OCA], [https://pdbe.org/2a3m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2a3m RCSB], [https://www.ebi.ac.uk/pdbsum/2a3m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2a3m ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q30WH0_OLEA2 Q30WH0_OLEA2]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
   <jmolCheckbox>
-    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a3/2a3m_consurf.spt"</scriptWhenChecked>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a3/2a3m_consurf.spt"</scriptWhenChecked>
-    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
@@ Line 26: / Line 29: @@
 </div>
 <div class="pdbe-citations 2a3m" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Desdg]]
+[[Category: Large Structures]]
-[[Category: Bottoms, C A]]
+[[Category: Oleidesulfovibrio alaskensis G20]]
-[[Category: Lee, Y H]]
+[[Category: Bottoms CA]]
-[[Category: Pattarkine, M V]]
+[[Category: Lee YH]]
-[[Category: Tanner, J J]]
+[[Category: Pattarkine MV]]
-[[Category: Wall, J D]]
+[[Category: Tanner JJ]]
-[[Category: Cytochrome c3]]
+[[Category: Wall JD]]
-[[Category: Desulfovibrio]]
-[[Category: Electron transport]]
-[[Category: Tetraheme cytochrome]]

2a3m

From Proteopedia

Current revision

Structure of Desulfovibrio desulfuricans G20 tetraheme cytochrome (oxidized form)

Structural highlights

Function

Evolutionary Conservation

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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