1kr3
From Proteopedia
(Difference between revisions)
(One intermediate revision not shown.) | |||
Line 1: | Line 1: | ||
==Crystal Structure of the Metallo beta-Lactamase from Bacteroides fragilis (CfiA) in Complex with the Tricyclic Inhibitor SB-236050.== | ==Crystal Structure of the Metallo beta-Lactamase from Bacteroides fragilis (CfiA) in Complex with the Tricyclic Inhibitor SB-236050.== | ||
- | <StructureSection load='1kr3' size='340' side='right' caption='[[1kr3]], [[Resolution|resolution]] 2.50Å' scene=''> | + | <StructureSection load='1kr3' size='340' side='right'caption='[[1kr3]], [[Resolution|resolution]] 2.50Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[1kr3]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[1kr3]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_fragilis Bacteroides fragilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KR3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KR3 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=113:7,8-DIHYDROXY-1-METHOXY-3-METHYL-10-OXO-4,10-DIHYDRO-1H,3H-PYRANO[4,3-B]CHROMENE-9-CARBOXYLIC+ACID'>113</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> |
- | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=113:7,8-DIHYDROXY-1-METHOXY-3-METHYL-10-OXO-4,10-DIHYDRO-1H,3H-PYRANO[4,3-B]CHROMENE-9-CARBOXYLIC+ACID'>113</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | |
- | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kr3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kr3 OCA], [https://pdbe.org/1kr3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kr3 RCSB], [https://www.ebi.ac.uk/pdbsum/1kr3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kr3 ProSAT]</span></td></tr> | |
- | + | ||
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
== Function == | == Function == | ||
- | [ | + | [https://www.uniprot.org/uniprot/BLAB_BACFG BLAB_BACFG] Can hydrolyze carbapenem compounds. |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
- | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kr/1kr3_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kr/1kr3_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
Line 31: | Line 29: | ||
</div> | </div> | ||
<div class="pdbe-citations 1kr3" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 1kr3" style="background-color:#fffaf0;"></div> | ||
+ | |||
+ | ==See Also== | ||
+ | *[[Beta-lactamase 3D structures|Beta-lactamase 3D structures]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: Bacteroides | + | [[Category: Bacteroides fragilis]] |
- | [[Category: | + | [[Category: Large Structures]] |
- | [[Category: Bateson | + | [[Category: Bateson JH]] |
- | [[Category: Boyd | + | [[Category: Boyd H]] |
- | [[Category: Cheever | + | [[Category: Cheever C]] |
- | [[Category: Concha | + | [[Category: Concha NO]] |
- | [[Category: Dez | + | [[Category: Dez E]] |
- | + | [[Category: Gilpin M]] | |
- | [[Category: Gilpin | + | [[Category: Hueso-Rodrguez JA]] |
- | [[Category: Hueso-Rodrguez | + | [[Category: Janson CA]] |
- | [[Category: Janson | + | [[Category: Niconovich NL]] |
- | [[Category: Niconovich | + | [[Category: Payne DJ]] |
- | [[Category: Payne | + | [[Category: Pearson S]] |
- | [[Category: Pearson | + | [[Category: Prez P]] |
- | [[Category: Prez | + | [[Category: Rees M]] |
- | [[Category: Rees | + | [[Category: Rittenhouse S]] |
- | [[Category: Rittenhouse | + | [[Category: Rivera-Sagredo A]] |
- | [[Category: Rivera-Sagredo | + | [[Category: Tew D]] |
- | [[Category: Tew | + | [[Category: De la Fuente J]] |
- | [[Category: | + | |
- | + | ||
- | + | ||
- | + |
Current revision
Crystal Structure of the Metallo beta-Lactamase from Bacteroides fragilis (CfiA) in Complex with the Tricyclic Inhibitor SB-236050.
|
Categories: Bacteroides fragilis | Large Structures | Bateson JH | Boyd H | Cheever C | Concha NO | Dez E | Gilpin M | Hueso-Rodrguez JA | Janson CA | Niconovich NL | Payne DJ | Pearson S | Prez P | Rees M | Rittenhouse S | Rivera-Sagredo A | Tew D | De la Fuente J