This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1zbp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:10, 15 May 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==X-Ray Crystal Structure of Protein VPA1032 from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR44==
==X-Ray Crystal Structure of Protein VPA1032 from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR44==
-
<StructureSection load='1zbp' size='340' side='right' caption='[[1zbp]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
+
<StructureSection load='1zbp' size='340' side='right'caption='[[1zbp]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1zbp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibpa Vibpa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZBP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZBP FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1zbp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZBP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZBP FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zbp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zbp OCA], [http://pdbe.org/1zbp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1zbp RCSB], [http://www.ebi.ac.uk/pdbsum/1zbp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1zbp ProSAT], [http://www.topsan.org/Proteins/NESGC/1zbp TOPSAN]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zbp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zbp OCA], [https://pdbe.org/1zbp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zbp RCSB], [https://www.ebi.ac.uk/pdbsum/1zbp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zbp ProSAT], [https://www.topsan.org/Proteins/NESGC/1zbp TOPSAN]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q87HD3_VIBPA Q87HD3_VIBPA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zb/1zbp_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zb/1zbp_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 30: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Vibpa]]
+
[[Category: Large Structures]]
-
[[Category: Acton, T B]]
+
[[Category: Vibrio parahaemolyticus RIMD 2210633]]
-
[[Category: Ciao, M]]
+
[[Category: Acton TB]]
-
[[Category: Forouhar, F]]
+
[[Category: Ciao M]]
-
[[Category: Hunt, J F]]
+
[[Category: Forouhar F]]
-
[[Category: Montelione, G T]]
+
[[Category: Hunt JF]]
-
[[Category: Structural genomic]]
+
[[Category: Montelione GT]]
-
[[Category: Tong, L]]
+
[[Category: Tong L]]
-
[[Category: Vorobiev, S M]]
+
[[Category: Vorobiev SM]]
-
[[Category: Yong, W]]
+
[[Category: Yong W]]
-
[[Category: Alpha-beta protein]]
+
-
[[Category: Nesg]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Unknown function]]
+

Current revision

X-Ray Crystal Structure of Protein VPA1032 from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR44

PDB ID 1zbp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1zbp"
Personal tools