1ylo

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:42, 30 October 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1ylo.gif|left|200px]]
 
-
{{Structure
+
==Crystal Structure of Protein of Unknown Function (Possible Aminopeptidase) S2589 from Shigella flexneri 2a str. 2457T==
-
|PDB= 1ylo |SIZE=350|CAPTION= <scene name='initialview01'>1ylo</scene>, resolution 2.15&Aring;
+
<StructureSection load='1ylo' size='340' side='right'caption='[[1ylo]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
+
<table><tr><td colspan='2'>[[1ylo]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Shigella_flexneri_2a_str._2457T Shigella flexneri 2a str. 2457T]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YLO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YLO FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam05343 Peptidase_M42], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK09961 PRK09961]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ylo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ylo OCA], [https://pdbe.org/1ylo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ylo RCSB], [https://www.ebi.ac.uk/pdbsum/1ylo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ylo ProSAT], [https://www.topsan.org/Proteins/MCSG/1ylo TOPSAN]</span></td></tr>
-
|RELATEDENTRY=[[1vhe|1VHE]]
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ylo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ylo OCA], [http://www.ebi.ac.uk/pdbsum/1ylo PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1ylo RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/A0A0H2VWV0_SHIFL A0A0H2VWV0_SHIFL]
-
 
+
== Evolutionary Conservation ==
-
'''Crystal Structure of Protein of Unknown Function (Possible Aminopeptidase) S2589 from Shigella flexneri 2a str. 2457T'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yl/1ylo_consurf.spt"</scriptWhenChecked>
-
1YLO is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Shigella_flexneri_2a_str._2457t Shigella flexneri 2a str. 2457t]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YLO OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Shigella flexneri 2a str. 2457t]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ylo ConSurf].
-
[[Category: Nocek, B P.]]
+
<div style="clear:both"></div>
-
[[Category: hypothetical protein s2589]]
+
__TOC__
-
[[Category: mcsg]]
+
</StructureSection>
-
[[Category: midwest center for structural genomic]]
+
[[Category: Large Structures]]
-
[[Category: protein structure initiative]]
+
[[Category: Shigella flexneri 2a str. 2457T]]
-
[[Category: psi]]
+
[[Category: Nocek BP]]
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:12:14 2008''
+

Current revision

Crystal Structure of Protein of Unknown Function (Possible Aminopeptidase) S2589 from Shigella flexneri 2a str. 2457T

PDB ID 1ylo

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools