1spq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:26, 25 October 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Understanding protein lids: Structural analysis of active hinge mutants in triosephosphate isomerase==
==Understanding protein lids: Structural analysis of active hinge mutants in triosephosphate isomerase==
-
<StructureSection load='1spq' size='340' side='right' caption='[[1spq]], [[Resolution|resolution]] 2.16&Aring;' scene=''>
+
<StructureSection load='1spq' size='340' side='right'caption='[[1spq]], [[Resolution|resolution]] 2.16&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1spq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Chick Chick]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SPQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1SPQ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1spq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SPQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SPQ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.16&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1sq7|1sq7]], [[1ssd|1ssd]], [[1ssg|1ssg]], [[1su5|1su5]], [[1sw0|1sw0]], [[1sw3|1sw3]], [[1sw7|1sw7]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TPI1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9031 CHICK])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1spq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1spq OCA], [https://pdbe.org/1spq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1spq RCSB], [https://www.ebi.ac.uk/pdbsum/1spq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1spq ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1spq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1spq OCA], [http://pdbe.org/1spq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1spq RCSB], [http://www.ebi.ac.uk/pdbsum/1spq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1spq ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/TPIS_CHICK TPIS_CHICK]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sp/1spq_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sp/1spq_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 31: Line 31:
==See Also==
==See Also==
-
*[[Triose Phosphate Isomerase|Triose Phosphate Isomerase]]
+
*[[Triose phosphate isomerase 3D structures|Triose phosphate isomerase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Chick]]
+
[[Category: Gallus gallus]]
-
[[Category: Triose-phosphate isomerase]]
+
[[Category: Large Structures]]
-
[[Category: Haapalainen, A M]]
+
[[Category: Haapalainen AM]]
-
[[Category: Kursula, I]]
+
[[Category: Kursula I]]
-
[[Category: Norledge, B V]]
+
[[Category: Norledge BV]]
-
[[Category: Salin, M]]
+
[[Category: Salin M]]
-
[[Category: Sampson, N S]]
+
[[Category: Sampson NS]]
-
[[Category: Sun, J]]
+
[[Category: Sun J]]
-
[[Category: Wierenga, R K]]
+
[[Category: Wierenga RK]]
-
[[Category: Archae]]
+
-
[[Category: Evolution]]
+
-
[[Category: Flexible loop-6]]
+
-
[[Category: Isomerase]]
+
-
[[Category: N-hinge]]
+
-
[[Category: Tim]]
+

Current revision

Understanding protein lids: Structural analysis of active hinge mutants in triosephosphate isomerase

PDB ID 1spq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools