This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ymy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:58, 14 February 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1ymy.gif|left|200px]]
 
-
{{Structure
+
==Crystal Structure of the N-Acetylglucosamine-6-phosphate deacetylase from Escherichia coli K12==
-
|PDB= 1ymy |SIZE=350|CAPTION= <scene name='initialview01'>1ymy</scene>, resolution 2.6&Aring;
+
<StructureSection load='1ymy' size='340' side='right'caption='[[1ymy]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[1ymy]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YMY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YMY FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/N-acetylglucosamine-6-phosphate_deacetylase N-acetylglucosamine-6-phosphate deacetylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.25 3.5.1.25] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-
|GENE= nagA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ymy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ymy OCA], [https://pdbe.org/1ymy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ymy RCSB], [https://www.ebi.ac.uk/pdbsum/1ymy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ymy ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1ymy TOPSAN]</span></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1228 HutI], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00854 NagA]</span>
+
</table>
-
|RELATEDENTRY=
+
== Function ==
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ymy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ymy OCA], [http://www.ebi.ac.uk/pdbsum/1ymy PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1ymy RCSB]</span>
+
[https://www.uniprot.org/uniprot/NAGA_ECOLI NAGA_ECOLI] Catalyzes the deacetylation of N-acetyl-D-glucosamine-6-phosphate. In vitro, can also hydrolyze substrate analogs such as N-thioacetyl-D-glucosamine-6-phosphate, N-trifluoroacetyl-D-glucosamine-6-phosphate, N-acetyl-D-glucosamine-6-sulfate, N-acetyl-D-galactosamine-6-phosphate, and N-formyl-D-glucosamine-6-phosphate.<ref>PMID:17567047</ref>
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''Crystal Structure of the N-Acetylglucosamine-6-phosphate deacetylase from Escherichia coli K12'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ym/1ymy_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
1YMY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YMY OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Escherichia coli]]
+
</jmolCheckbox>
-
[[Category: N-acetylglucosamine-6-phosphate deacetylase]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ymy ConSurf].
-
[[Category: Single protein]]
+
<div style="clear:both"></div>
-
[[Category: Almo, S C.]]
+
== References ==
-
[[Category: Burley, S K.]]
+
<references/>
-
[[Category: Fedorov, A A.]]
+
__TOC__
-
[[Category: Fedorov, E V.]]
+
</StructureSection>
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[[Category: Escherichia coli K-12]]
-
[[Category: Raushel, F M.]]
+
[[Category: Large Structures]]
-
[[Category: Xiang, D F.]]
+
[[Category: Almo SC]]
-
[[Category: naga]]
+
[[Category: Burley SK]]
-
[[Category: new york structural genomix research consortium]]
+
[[Category: Fedorov AA]]
-
[[Category: nysgxrc target t2187]]
+
[[Category: Fedorov EV]]
-
[[Category: protein structure initiative]]
+
[[Category: Raushel FM]]
-
[[Category: psi]]
+
[[Category: Xiang DF]]
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:13:43 2008''
+

Current revision

Crystal Structure of the N-Acetylglucosamine-6-phosphate deacetylase from Escherichia coli K12

PDB ID 1ymy

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ymy"
Personal tools