1yrh

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==Crystal Structure Of Trp Repressor Binding Protein Wrba in complex with FMN==
==Crystal Structure Of Trp Repressor Binding Protein Wrba in complex with FMN==
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<StructureSection load='1yrh' size='340' side='right' caption='[[1yrh]], [[Resolution|resolution]] 3.11&Aring;' scene=''>
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<StructureSection load='1yrh' size='340' side='right'caption='[[1yrh]], [[Resolution|resolution]] 3.11&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[1yrh]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/"micrococcus_radiodurans"_raj_et_al._1960 "micrococcus radiodurans" raj et al. 1960]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YRH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YRH FirstGlance]. <br>
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<table><tr><td colspan='2'>[[1yrh]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YRH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YRH FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.11&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1ydg|1ydg]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yrh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yrh OCA], [https://pdbe.org/1yrh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yrh RCSB], [https://www.ebi.ac.uk/pdbsum/1yrh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yrh ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1yrh TOPSAN]</span></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DRA0214 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1299 "Micrococcus radiodurans" Raj et al. 1960])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yrh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yrh OCA], [http://pdbe.org/1yrh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yrh RCSB], [http://www.ebi.ac.uk/pdbsum/1yrh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1yrh ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/1yrh TOPSAN]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/NQOR_DEIRA NQOR_DEIRA]] It seems to function in response to environmental stress when various electron transfer chains are affected or when the environment is highly oxidizing. It reduces quinones to the hydroquinone state to prevent interaction of the semiquinone with O2 and production of superoxide (By similarity).
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[https://www.uniprot.org/uniprot/NQOR_DEIRA NQOR_DEIRA] It seems to function in response to environmental stress when various electron transfer chains are affected or when the environment is highly oxidizing. It reduces quinones to the hydroquinone state to prevent interaction of the semiquinone with O2 and production of superoxide (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yr/1yrh_consurf.spt"</scriptWhenChecked>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yr/1yrh_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Micrococcus radiodurans raj et al. 1960]]
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[[Category: Deinococcus radiodurans]]
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[[Category: Burley, S K]]
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[[Category: Large Structures]]
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[[Category: Gorman, J]]
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[[Category: Burley SK]]
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[[Category: Structural genomic]]
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[[Category: Gorman J]]
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[[Category: Shapiro, L]]
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[[Category: Shapiro L]]
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[[Category: Alpha-beta twisted open sheet]]
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[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
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[[Category: Protein binding]]
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[[Category: PSI, Protein structure initiative]]
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Current revision

Crystal Structure Of Trp Repressor Binding Protein Wrba in complex with FMN

PDB ID 1yrh

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