1xto

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:31, 9 October 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal Structure of the Coenzyme PQQ Synthesis Protein (PqqB) from Pseudomonas putida, Northeast Structural Genomics Target PpR6==
==Crystal Structure of the Coenzyme PQQ Synthesis Protein (PqqB) from Pseudomonas putida, Northeast Structural Genomics Target PpR6==
-
<StructureSection load='1xto' size='340' side='right' caption='[[1xto]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
+
<StructureSection load='1xto' size='340' side='right'caption='[[1xto]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1xto]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Psepk Psepk]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XTO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XTO FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1xto]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida_KT2440 Pseudomonas putida KT2440]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XTO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XTO FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pqqB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=160488 PSEPK])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xto FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xto OCA], [https://pdbe.org/1xto PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xto RCSB], [https://www.ebi.ac.uk/pdbsum/1xto PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xto ProSAT], [https://www.topsan.org/Proteins/NESGC/1xto TOPSAN]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xto FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xto OCA], [http://pdbe.org/1xto PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xto RCSB], [http://www.ebi.ac.uk/pdbsum/1xto PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xto ProSAT], [http://www.topsan.org/Proteins/NESGC/1xto TOPSAN]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/PQQB_PSEPK PQQB_PSEPK]] May be involved in the transport of PQQ or its precursor to the periplasm (By similarity).
+
[https://www.uniprot.org/uniprot/PQQB_PSEPK PQQB_PSEPK] May be involved in the transport of PQQ or its precursor to the periplasm (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xt/1xto_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xt/1xto_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 23: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Psepk]]
+
[[Category: Large Structures]]
-
[[Category: Acton, T B]]
+
[[Category: Pseudomonas putida KT2440]]
-
[[Category: Chen, Y]]
+
[[Category: Acton TB]]
-
[[Category: Forouhar, F]]
+
[[Category: Chen Y]]
-
[[Category: Hunt, J F]]
+
[[Category: Forouhar F]]
-
[[Category: Kuzin, A]]
+
[[Category: Hunt JF]]
-
[[Category: Montelione, G T]]
+
[[Category: Kuzin A]]
-
[[Category: Structural genomic]]
+
[[Category: Montelione GT]]
-
[[Category: Tong, L]]
+
[[Category: Tong L]]
-
[[Category: Vorobiev, S M]]
+
[[Category: Vorobiev SM]]
-
[[Category: Xiao, R]]
+
[[Category: Xiao R]]
-
[[Category: Alpha-beta protein]]
+
-
[[Category: Nesg]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Unknown function]]
+

Current revision

Crystal Structure of the Coenzyme PQQ Synthesis Protein (PqqB) from Pseudomonas putida, Northeast Structural Genomics Target PpR6

PDB ID 1xto

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1xto"
Personal tools