2be4

From Proteopedia

(Difference between revisions)

Current revision

X-RAY STRUCTURE AN EF-HAND PROTEIN FROM DANIO RERIO Dr.36843

Structural highlights

2be4 is a 1 chain structure with sequence from Danio rerio. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 2.1Å
Ligands:
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

SEGN_DANRE

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

Many essential physiological processes are regulated by the modulation of calcium concentration in the cell. The EF-hand proteins represent a superfamily of calcium-binding proteins involved in calcium signaling and homeostasis. Secretagogin is a hexa-EF-hand protein that is highly expressed in pancreatic islet of Langerhans and neuroendocrine cells and may play a role in the trafficking of secretory granules. We present the X-ray structure of Danio rerio secretagogin, which is 73% identical to human secretagogin, in calcium-free form at 2.1-A resolution. Secretagogin consists of the three globular domains each of which contains a pair of EF-hand motifs. The domains are arranged into a V-shaped molecule with a distinct groove formed at the interface of the domains. Comparison of the secretagogin structure with the solution structure of calcium-loaded calbindin D(28K) revealed a striking difference in the spatial arrangement of their domains, which involves approximately 180 degrees rotation of the first globular domain with respect to the module formed by the remaining domains.

X-ray structure of Danio rerio secretagogin: A hexa-EF-hand calcium sensor.,Bitto E, Bingman CA, Bittova L, Frederick RO, Fox BG, Phillips GN Jr Proteins. 2009 Aug 1;76(2):477-83. PMID:19241471^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Bitto E, Bingman CA, Bittova L, Frederick RO, Fox BG, Phillips GN Jr. X-ray structure of Danio rerio secretagogin: A hexa-EF-hand calcium sensor. Proteins. 2009 Aug 1;76(2):477-83. PMID:19241471 doi:10.1002/prot.22362

1 Structural highlights
2 Function
3 Evolutionary Conservation
4 Publication Abstract from PubMed
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2be4"

@@ Line 1: / Line 1: @@
 ==X-RAY STRUCTURE AN EF-HAND PROTEIN FROM DANIO RERIO Dr.36843==
-<StructureSection load='2be4' size='340' side='right' caption='[[2be4]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+<StructureSection load='2be4' size='340' side='right'caption='[[2be4]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2be4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Brachidanio_rerio Brachidanio rerio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BE4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BE4 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2be4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Danio_rerio Danio rerio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BE4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BE4 FirstGlance]. <br>
-</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Dr.36843, BC083168 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7955 Brachidanio rerio])</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2be4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2be4 OCA], [http://pdbe.org/2be4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2be4 RCSB], [http://www.ebi.ac.uk/pdbsum/2be4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2be4 ProSAT], [http://www.topsan.org/Proteins/CESG/2be4 TOPSAN]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2be4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2be4 OCA], [https://pdbe.org/2be4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2be4 RCSB], [https://www.ebi.ac.uk/pdbsum/2be4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2be4 ProSAT], [https://www.topsan.org/Proteins/CESG/2be4 TOPSAN]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/SEGN_DANRE SEGN_DANRE]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
   <jmolCheckbox>
-    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/be/2be4_consurf.spt"</scriptWhenChecked>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/be/2be4_consurf.spt"</scriptWhenChecked>
-    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
@@ Line 31: / Line 33: @@
 __TOC__
 </StructureSection>
-[[Category: Brachidanio rerio]]
+[[Category: Danio rerio]]
-[[Category: Bae, E]]
+[[Category: Large Structures]]
-[[Category: Bingman, C A]]
+[[Category: Bae E]]
-[[Category: Bitto, E]]
+[[Category: Bingman CA]]
-[[Category: Structural genomic]]
+[[Category: Bitto E]]
-[[Category: Han, B W]]
+[[Category: Han BW]]
-[[Category: Phillips, G N]]
+[[Category: Phillips Jr GN]]
-[[Category: Wesenberg, G E]]
+[[Category: Wesenberg GE]]
-[[Category: Bc083168]]
-[[Category: Calicium binding]]
-[[Category: Cesg]]
-[[Category: Dr 36843]]
-[[Category: Ef-hand superfamily]]
-[[Category: PSI, Protein structure initiative]]
-[[Category: Unknown function]]

2be4

From Proteopedia

Current revision

X-RAY STRUCTURE AN EF-HAND PROTEIN FROM DANIO RERIO Dr.36843

Structural highlights

Function

Evolutionary Conservation

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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