2nlc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:22, 17 October 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Human beta-defensin-1 (mutant Ser8Ala)==
==Human beta-defensin-1 (mutant Ser8Ala)==
-
<StructureSection load='2nlc' size='340' side='right' caption='[[2nlc]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
+
<StructureSection load='2nlc' size='340' side='right'caption='[[2nlc]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2nlc]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NLC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NLC FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2nlc]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NLC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NLC FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1ijv|1ijv]], [[2nlb|2nlb]], [[2nld|2nld]], [[2nle|2nle]], [[2nlf|2nlf]], [[2nlg|2nlg]], [[2nlh|2nlh]], [[2nlp|2nlp]], [[2nlq|2nlq]], [[2nls|2nls]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DEFB1, BD1, HBD1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nlc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nlc OCA], [https://pdbe.org/2nlc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nlc RCSB], [https://www.ebi.ac.uk/pdbsum/2nlc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nlc ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nlc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nlc OCA], [http://pdbe.org/2nlc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2nlc RCSB], [http://www.ebi.ac.uk/pdbsum/2nlc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2nlc ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/DEFB1_HUMAN DEFB1_HUMAN]] Has bactericidal activity (By similarity).
+
[https://www.uniprot.org/uniprot/DEFB1_HUMAN DEFB1_HUMAN] Has bactericidal activity (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nl/2nlc_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nl/2nlc_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 30: Line 29:
</div>
</div>
<div class="pdbe-citations 2nlc" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 2nlc" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Defensin 3D structures|Defensin 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Human]]
+
[[Category: Homo sapiens]]
-
[[Category: Lubkowski, J]]
+
[[Category: Large Structures]]
-
[[Category: Pazgier, M]]
+
[[Category: Lubkowski J]]
-
[[Category: Antimicrobial]]
+
[[Category: Pazgier M]]
-
[[Category: Antimicrobial protein]]
+
-
[[Category: Chemotactic]]
+
-
[[Category: Defensin]]
+
-
[[Category: Mutant]]
+

Current revision

Human beta-defensin-1 (mutant Ser8Ala)

PDB ID 2nlc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools