2nvp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:21, 30 October 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==X-Ray Crystal Structure of Protein CPF_0428 from Clostridium perfringens. Northeast Structural Genomics Consortium Target CpR63.==
==X-Ray Crystal Structure of Protein CPF_0428 from Clostridium perfringens. Northeast Structural Genomics Consortium Target CpR63.==
-
<StructureSection load='2nvp' size='340' side='right' caption='[[2nvp]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
+
<StructureSection load='2nvp' size='340' side='right'caption='[[2nvp]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2nvp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_perfringens"_veillon_and_zuber_1898 "bacillus perfringens" veillon and zuber 1898]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NVP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NVP FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2nvp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_perfringens Clostridium perfringens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NVP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NVP FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CPF_0428 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1502 "Bacillus perfringens" Veillon and Zuber 1898])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nvp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nvp OCA], [http://pdbe.org/2nvp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2nvp RCSB], [http://www.ebi.ac.uk/pdbsum/2nvp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2nvp ProSAT], [http://www.topsan.org/Proteins/NESGC/2nvp TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nvp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nvp OCA], [https://pdbe.org/2nvp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nvp RCSB], [https://www.ebi.ac.uk/pdbsum/2nvp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nvp ProSAT], [https://www.topsan.org/Proteins/NESGC/2nvp TOPSAN]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8XNB2_CLOPE Q8XNB2_CLOPE]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nv/2nvp_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nv/2nvp_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 20: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus perfringens veillon and zuber 1898]]
+
[[Category: Clostridium perfringens]]
-
[[Category: Acton, T B]]
+
[[Category: Large Structures]]
-
[[Category: Baran, M C]]
+
[[Category: Acton TB]]
-
[[Category: Chen, Y]]
+
[[Category: Baran MC]]
-
[[Category: Cunningham, K]]
+
[[Category: Chen Y]]
-
[[Category: Fang, Y]]
+
[[Category: Cunningham K]]
-
[[Category: Forouhar, F]]
+
[[Category: Fang Y]]
-
[[Category: Hunt, J F]]
+
[[Category: Forouhar F]]
-
[[Category: Ma, L C]]
+
[[Category: Hunt JF]]
-
[[Category: Montelione, G T]]
+
[[Category: Ma L-C]]
-
[[Category: Structural genomic]]
+
[[Category: Montelione GT]]
-
[[Category: Seetharaman, J]]
+
[[Category: Seetharaman J]]
-
[[Category: Tong, L]]
+
[[Category: Tong L]]
-
[[Category: Xiao, R]]
+
[[Category: Xiao R]]
-
[[Category: Alpha beta protein]]
+
-
[[Category: Nesg]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Unknown function]]
+

Current revision

X-Ray Crystal Structure of Protein CPF_0428 from Clostridium perfringens. Northeast Structural Genomics Consortium Target CpR63.

PDB ID 2nvp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools