This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2o1z
From Proteopedia
(Difference between revisions)
| (2 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
==Plasmodium vivax Ribonucleotide Reductase Subunit R2 (Pv086155)== | ==Plasmodium vivax Ribonucleotide Reductase Subunit R2 (Pv086155)== | ||
| - | <StructureSection load='2o1z' size='340' side='right' caption='[[2o1z]], [[Resolution|resolution]] 2.40Å' scene=''> | + | <StructureSection load='2o1z' size='340' side='right'caption='[[2o1z]], [[Resolution|resolution]] 2.40Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2o1z]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2o1z]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_vivax Plasmodium vivax]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O1Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O1Z FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4Å</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o1z OCA], [https://pdbe.org/2o1z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o1z RCSB], [https://www.ebi.ac.uk/pdbsum/2o1z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o1z ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/A5K1H0_PLAVS A5K1H0_PLAVS] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o1/2o1z_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o1/2o1z_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
| Line 17: | Line 20: | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2o1z ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2o1z ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Ribonucleotide reductase 3D structures|Ribonucleotide reductase 3D structures]] | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Amani | + | [[Category: Plasmodium vivax]] |
| - | [[Category: Arrowsmith | + | [[Category: Amani M]] |
| - | [[Category: Artz | + | [[Category: Arrowsmith CH]] |
| - | [[Category: Bochkarev | + | [[Category: Artz JD]] |
| - | [[Category: Dong | + | [[Category: Bochkarev A]] |
| - | [[Category: Edwards | + | [[Category: Dong A]] |
| - | [[Category: Hassanali | + | [[Category: Edwards AM]] |
| - | [[Category: Hui | + | [[Category: Hassanali A]] |
| - | [[Category: Lew | + | [[Category: Hui R]] |
| - | [[Category: Lin | + | [[Category: Lew J]] |
| - | [[Category: Melone | + | [[Category: Lin YH]] |
| - | [[Category: Nordlund | + | [[Category: Melone M]] |
| - | [[Category: Qiu | + | [[Category: Nordlund P]] |
| - | + | [[Category: Qiu W]] | |
| - | [[Category: Sundstrom | + | [[Category: Sundstrom M]] |
| - | [[Category: Tempel | + | [[Category: Tempel W]] |
| - | [[Category: Weigelt | + | [[Category: Weigelt J]] |
| - | [[Category: Wernimont | + | [[Category: Wernimont AK]] |
| - | [[Category: Zhao | + | [[Category: Zhao Y]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Plasmodium vivax Ribonucleotide Reductase Subunit R2 (Pv086155)
| |||||||||||
Categories: Large Structures | Plasmodium vivax | Amani M | Arrowsmith CH | Artz JD | Bochkarev A | Dong A | Edwards AM | Hassanali A | Hui R | Lew J | Lin YH | Melone M | Nordlund P | Qiu W | Sundstrom M | Tempel W | Weigelt J | Wernimont AK | Zhao Y
