This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2oba

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:34, 30 August 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Pseudomonas aeruginosa 6-pyruvoyl tetrahydrobiopterin synthase==
==Pseudomonas aeruginosa 6-pyruvoyl tetrahydrobiopterin synthase==
-
<StructureSection load='2oba' size='340' side='right' caption='[[2oba]], [[Resolution|resolution]] 2.33&Aring;' scene=''>
+
<StructureSection load='2oba' size='340' side='right'caption='[[2oba]], [[Resolution|resolution]] 2.33&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2oba]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OBA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OBA FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2oba]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OBA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OBA FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.33&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PA2666 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oba FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oba OCA], [https://pdbe.org/2oba PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oba RCSB], [https://www.ebi.ac.uk/pdbsum/2oba PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oba ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/6-pyruvoyltetrahydropterin_synthase 6-pyruvoyltetrahydropterin synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.3.12 4.2.3.12] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oba FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oba OCA], [http://pdbe.org/2oba PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2oba RCSB], [http://www.ebi.ac.uk/pdbsum/2oba PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2oba ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9I0H2_PSEAE Q9I0H2_PSEAE]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ob/2oba_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ob/2oba_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 22: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: 6-pyruvoyltetrahydropterin synthase]]
+
[[Category: Large Structures]]
-
[[Category: Battaile, K]]
+
[[Category: Pseudomonas aeruginosa]]
-
[[Category: Chirgadze, N Y]]
+
[[Category: Battaile K]]
-
[[Category: Edwards, A M]]
+
[[Category: Chirgadze NY]]
-
[[Category: Guthrie, J]]
+
[[Category: Edwards AM]]
-
[[Category: Kisselman, G]]
+
[[Category: Guthrie J]]
-
[[Category: Mansoury, K]]
+
[[Category: Kisselman G]]
-
[[Category: McGrath, T E]]
+
[[Category: Mansoury K]]
-
[[Category: Pai, E F]]
+
[[Category: McGrath TE]]
-
[[Category: Romanov, V]]
+
[[Category: Pai EF]]
-
[[Category: Virag, C]]
+
[[Category: Romanov V]]
-
[[Category: Wu-Brown, J]]
+
[[Category: Virag C]]
-
[[Category: Lyase]]
+
[[Category: Wu-Brown J]]
-
[[Category: Ptp synthase]]
+
-
[[Category: Ptp]]
+
-
[[Category: Tetrahydrobiopterin biosynthesis]]
+

Current revision

Pseudomonas aeruginosa 6-pyruvoyl tetrahydrobiopterin synthase

PDB ID 2oba

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools