This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2qgy
From Proteopedia
(Difference between revisions)
| (2 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
==Crystal structure of an enolase from the environmental genome shotgun sequencing of the Sargasso Sea== | ==Crystal structure of an enolase from the environmental genome shotgun sequencing of the Sargasso Sea== | ||
| - | <StructureSection load='2qgy' size='340' side='right' caption='[[2qgy]], [[Resolution|resolution]] 1.80Å' scene=''> | + | <StructureSection load='2qgy' size='340' side='right'caption='[[2qgy]], [[Resolution|resolution]] 1.80Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2qgy]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QGY OCA]. For a <b>guided tour on the structure components</b> use [ | + | <table><tr><td colspan='2'>[[2qgy]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QGY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QGY FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qgy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qgy OCA], [https://pdbe.org/2qgy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qgy RCSB], [https://www.ebi.ac.uk/pdbsum/2qgy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qgy ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2qgy TOPSAN]</span></td></tr> | ||
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
| Line 11: | Line 12: | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qg/2qgy_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qg/2qgy_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
| Line 17: | Line 18: | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qgy ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qgy ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Enolase 3D structures|Enolase 3D structures]] | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Almo | + | [[Category: Large Structures]] |
| - | [[Category: Bain | + | [[Category: Almo SC]] |
| - | [[Category: Bonanno | + | [[Category: Bain KT]] |
| - | [[Category: Burley | + | [[Category: Bonanno JB]] |
| - | [[Category: Gilmore | + | [[Category: Burley SK]] |
| - | [[Category: Lau | + | [[Category: Gilmore M]] |
| - | + | [[Category: Lau C]] | |
| - | [[Category: Romero | + | [[Category: Romero R]] |
| - | [[Category: Sauder | + | [[Category: Sauder JM]] |
| - | [[Category: Smith | + | [[Category: Smith D]] |
| - | [[Category: Wasserman | + | [[Category: Wasserman S]] |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of an enolase from the environmental genome shotgun sequencing of the Sargasso Sea
| |||||||||||
Categories: Large Structures | Almo SC | Bain KT | Bonanno JB | Burley SK | Gilmore M | Lau C | Romero R | Sauder JM | Smith D | Wasserman S
