This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1z1f

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:38, 13 March 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1z1f.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of stilbene synthase from Arachis hypogaea (resveratrol-bound form)==
-
|PDB= 1z1f |SIZE=350|CAPTION= <scene name='initialview01'>1z1f</scene>, resolution 2.90&Aring;
+
<StructureSection load='1z1f' size='340' side='right'caption='[[1z1f]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=STL:RESVERATROL'>STL</scene>
+
<table><tr><td colspan='2'>[[1z1f]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arachis_hypogaea Arachis hypogaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z1F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Z1F FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Trihydroxystilbene_synthase Trihydroxystilbene synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.1.95 2.3.1.95] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=STL:RESVERATROL'>STL</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1z1f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z1f OCA], [https://pdbe.org/1z1f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1z1f RCSB], [https://www.ebi.ac.uk/pdbsum/1z1f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1z1f ProSAT]</span></td></tr>
-
|RELATEDENTRY=[[1z1e|1Z1E]]
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1z1f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z1f OCA], [http://www.ebi.ac.uk/pdbsum/1z1f PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1z1f RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/Q9SLV5_ARAHY Q9SLV5_ARAHY]
-
 
+
== Evolutionary Conservation ==
-
'''Crystal structure of stilbene synthase from Arachis hypogaea (resveratrol-bound form)'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z1/1z1f_consurf.spt"</scriptWhenChecked>
-
1Z1F is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Arachis_hypogaea Arachis hypogaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z1F OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==Reference==
+
</jmolCheckbox>
-
Crystal structure of stilbene synthase from Arachis hypogaea., Shomura Y, Torayama I, Suh DY, Xiang T, Kita A, Sankawa U, Miki K, Proteins. 2005 Sep 1;60(4):803-6. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16028220 16028220]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1z1f ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Arachis hypogaea]]
[[Category: Arachis hypogaea]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Trihydroxystilbene synthase]]
+
[[Category: Kita A]]
-
[[Category: Kita, A.]]
+
[[Category: Miki K]]
-
[[Category: Miki, K.]]
+
[[Category: Sankawa U]]
-
[[Category: Sankawa, U.]]
+
[[Category: Shomura Y]]
-
[[Category: Shomura, Y.]]
+
[[Category: Suh DY]]
-
[[Category: Suh, D Y.]]
+
[[Category: Torayama I]]
-
[[Category: Torayama, I.]]
+
[[Category: Xiang T]]
-
[[Category: Xiang, T.]]
+
-
[[Category: stilbene]]
+
-
[[Category: st]]
+
-
[[Category: type iii polyketide synthase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:27:38 2008''
+

Current revision

Crystal structure of stilbene synthase from Arachis hypogaea (resveratrol-bound form)

PDB ID 1z1f

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools