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'''Phosphotriesterase-Like Lactonase (PLL)'''
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==Phosphotriesterase-Like Lactonase (PLL)==
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<StructureSection load='2vc5' size='340' side='right' caption='3D Structure of SsoPox wild type (PDB ID [[2vc5]])' scene=''>
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----
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== '''Overview''' ==
== '''Overview''' ==
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'''Phosphotriesterase-Like Lactonase (PLL)''' family includes a group of enzymes that have main lactonase activity on lactones and acyl-homoserin lactones (AHLs) and, in addition, low promiscuous phosphotriesterase activity towards organophosphates compound (OPs). At the beginning most of them has been identified as putative phosphotriesterases and were called "Paraoxonases" (Pox) because able to degrade pesticides such as paraoxon. However, further structural, phylogenetic, and biochemical studies have revealed that these enzymes have a proficient lactonase activity, beside the weak phosphotriesterase activity.
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'''Phosphotriesterase-Like Lactonase (PLL)''' family includes a group of enzymes that have main lactonase activity on lactones and acyl-homoserin lactones (AHLs) and, in addition, low promiscuous phosphotriesterase activity towards organophosphates compound (OPs). At the beginning most of them has been identified as putative phosphotriesterases and were called "Paraoxonases" (Pox) because able to degrade pesticides such as paraoxon <ref name='Merone'>PMID: 15909078</ref> <ref name='Porzio'>PMID:17337320</ref>. However, further structural, phylogenetic, and biochemical studies have revealed that these enzymes have a proficient lactonase activity, beside the weak phosphotriesterase activity <ref name='Afriat'>PMID:17105187</ref>.
== '''SsoPox''' ==
== '''SsoPox''' ==
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Sso Pox is a protein of 314 aa deriving from the hyperthermophilic archaeon ''Sulfolobus solfataricus'' and it is the first protein with phosphotriesterase activities to be identified in Archaea. It has an exceptional thermal stability with denaturation half-life of 4h and 90 min at 95 °C and 100 °C, respectively.
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Sso Pox is a protein of 314 aa deriving from the hyperthermophilic archaeon ''Sulfolobus solfataricus'' and it is the first protein with phosphotriesterase activities to be identified in Archaea. It has an exceptional thermal stability with denaturation half-life of 4h and 90 min at 95 °C and 100 °C <ref name="Merone"/><ref name='Porzio'/>.
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Its activity depends on the presence of metal ions, with cobalt significantly enhancing catalysis. SsoPox have been reported to catalyse the hydrolysis of different N-acyl homoserine lactones AHLs; suggesting a physiological role as a quorum quencher lactonase. Infact the AHLs are natural molecules involved in the cell–cell communication process known as quorum sensing (QS) and any bacterial species may produce different AHLs, which vary in the length and substitution of the acyl chain. The anti-QS mechanisms of the enzyme works by the hydrolysis of the lactone bond of these AHLs.
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Its activity depends on the presence of metal ions, with cobalt significantly enhancing catalysis. SsoPox have been reported to catalyse the hydrolysis of different N-acyl homoserine lactones AHLs; suggesting a physiological role as a quorum quencher lactonase. Infact the AHLs are natural molecules involved in the cell–cell communication process known as quorum sensing (QS) and any bacterial species may produce different AHLs, which vary in the length and substitution of the acyl chain. The anti-QS mechanisms of the enzyme works by the hydrolysis of the lactone bond of these AHLs. <ref name='Afriat'/>
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<Structure load='2VC5' size='450' frame='true' align='right' caption='SsoPox wild type' scene='Insert optional scene name here' />
 
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== '''Structural highlights''' <ref>PMID:18486146</ref>==
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SsoPox is homodimeric, and the monomer is roughly globular. The SsoPox structure could be described as a distorted <scene name='77/770586/Alfa_beta_8_barrel/2'>(α)-8 barrel </scene>. The SsoPox active site consists of a cavity containing a <scene name='77/770586/Bi-nuclear_center/2'>bi-nuclear center</scene>, located at the C terminus of the β -barrel. These two metal cations are bridged by a putative catalytic <scene name='77/770586/Bi-nuclear_center/4'>water molecule</scene>, and by <scene name='77/770586/Lis_137_ok/2'>carboxylated lysine</scene> . As for the metal cation coordination, <scene name='77/770586/4_histidine/3'>four histidine residues </scene> are also involved, as well as <scene name='77/770586/Asp_256/1'>an aspartic acid (Asp256)</scene> and a <scene name='77/770586/Bi-nuclear_center/5'>second watermolecule</scene>.
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== '''Structural features''' ==
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The most deeply buried metal cation (called α) adopts a trigonal bipyramidal geometry, being bound by coordination bonds with <scene name='77/770586/Alfa_coordination/3'>with His22, His24, Asp256, Lys137 and the bridging water molecule</scene>. The most solvent exposed (called β ) has a distorted trigonal bipyramidal geometry, and is bound to <scene name='77/770586/Cation_beta/4'>His170, His199, Lys137, the bridging water molecule</scene> and the second water molecule.
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SsoPox is homodimeric, and the monomer is roughly globular. The SsoPox structure could be described as a distorted <scene name='77/770586/Alfa_beta_8_barrel/1'>(β /α) 8 barrel</scene>. The SsoPox active site consists of a cavity containing a <scene name='77/770586/Bi-nuclear_center/2'>bi-nuclear center</scene>, located at the C terminus of the β -barrel. These two metal cations are bridged by a putative catalytic water molecule, and by a carboxylated lysine. As for the metal cation coordination, four histidine residues are also involved, as well as an aspartic acid (Asp256) and a second watermolecule.
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So SsoPox results in a protein with heterobinuclear centre constituted by <scene name='77/770586/Bi-nuclear_center/7'>iron (α-site) and a cobalt cation (β-site)</scene>. The 3D structure of SsoPox has been solved in the apo form and <scene name='77/770586/Plus_substrate/2'>in complex with a quorum sensing lactone mimics N-decanoyl-Lhomocysteine thiolactone (C10-HTL)</scene>. The structure reveals a <scene name='77/770586/Plus_substrate/4'>unique hydrophobic channel</scene> that perfectly accommodates the acyl chain of C10-HTL.
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The most deeply buried metal cation (called α) adopts a trigonal bipyramidal geometry, being bound by coordination bonds with His22, His24, Asp256, Lys137 and the bridging water molecule. The most solvent exposed (called β ) has a distorted trigonal bipyramidal geometry, and is bound to His170, His199, Lys137, the bridging water molecule and the second water molecule.
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Results suggest that the high thermal stability of SsoPox resides in the larger number of surface salt bridges, which are involved in surface networks, and in the optimization of the interactions at the interface between the two monomers, which stabilize the dimeric structure of SsoPox. The crystal structure of SsoPox shows that the <scene name='77/770586/Charged_residues/1'>charged residues</scene> are principally located in solvent accessible regions, on the protein surface. Half of these surface-charged residues are involved in salt bridges; in particular, SsoPox contains 25 salt bridges per monomer.
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So SsoPox results in a protein with heterobinuclear centre constituted by an iron (α-site) and a cobalt cation (β-site). The 3D structure of SsoPox has been solved in the apo form and in complex with a quorum sensing lactone mimics N-decanoyl-Lhomocysteine thiolactone (C10-HTL). The structure reveals a unique hydrophobic channel that perfectly accommodates the acyl chain of C10-HTL.
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In each monomer of SsoPox, the two chain termini are linked by a salt bridge <scene name='77/770586/Ser314_and_the_guanidinium_gro/3'>between the terminal carboxylic group of Ser314 and the guanidinium group of Arg 2</scene>; moreover, <scene name='77/770586/Pro4_309/1'>the residues Pro4 and Pro309</scene> confer rigidity to the chain termini in the SsoPox structure, two large hydrophobic clusters are formed, each constituted by the side chains of <scene name='77/770586/Sidechains/3'>Phe104 and Leu107 of one subunit, and Tyr97, Tyr99 and Trp263 of the other subunit</scene>, contributing to the anchoring of the two monomers.
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Results suggest that the high thermal stability of SsoPox resides in the larger number of surface salt bridges, which are involved in surface networks, and in the optimization of the interactions at the interface between the two monomers, which stabilize the dimeric structure of SsoPox. The crystal structure of SsoPox shows that the charged residues are principally located in solvent accessible regions, on the protein surface. Half of these surface-charged residues are involved in salt bridges; in particular, SsoPox contains 25 salt bridges per monomer.
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In each monomer of SsoPox, the two chain termini are linked by a salt bridge between the terminal carboxylic group of Ser314 and the guanidinium group of Arg 2; moreover, the residues Pro4 and Pro309 confer rigidity to the chain termini in the SsoPox structure, two large hydrophobic clusters are formed, each constituted by the side chains of Phe104 and Leu107 of one subunit, and Tyr97, Tyr99 and Trp263 of the other subunit, contributing to the anchoring of the two monomers.
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Ssopox belongs to the PLL family of enzyme which has the peculiar characteristic to have promiscuous activites toward lactones and organophosphates compounds. Owing to these promiscuous activities, the thermostability and rare properties, SsoPox is considered an excellent starting point for biotechnological applications directed towards the achievement of efficient bioscavengers for organophosphorus compounds and against certain pathogens.
Ssopox belongs to the PLL family of enzyme which has the peculiar characteristic to have promiscuous activites toward lactones and organophosphates compounds. Owing to these promiscuous activities, the thermostability and rare properties, SsoPox is considered an excellent starting point for biotechnological applications directed towards the achievement of efficient bioscavengers for organophosphorus compounds and against certain pathogens.
In vitro directed evolution experiments demonstrated the possibility that, if there is an immediate selective advantage, promiscuous activities of enzymes can diverge quickly in new functions by means of a limited number of mutations. By enhancing the stability and, in particular, the thermostability of some hydrolytic enzymes the protein gains a structural stability; a convenient prerequisite for every in vitro evolutive approach.
In vitro directed evolution experiments demonstrated the possibility that, if there is an immediate selective advantage, promiscuous activities of enzymes can diverge quickly in new functions by means of a limited number of mutations. By enhancing the stability and, in particular, the thermostability of some hydrolytic enzymes the protein gains a structural stability; a convenient prerequisite for every in vitro evolutive approach.
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The protein’s tolerance to substitutions (its neutrality) allows the analysis of kinetically more mutated forms, allowing a wider screening and a complete overview of the amino acids’ position roles [83]. For these reasons SsoPox and other enzymes of the same family appear good candidates for engineering approaches aimed at biotechnological applications in the industrial field.
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The protein’s tolerance to substitutions (its neutrality) allows the analysis of kinetically more mutated forms, allowing a wider screening and a complete overview of the amino acids’ position roles <ref>PMID:16171387</ref>. For these reasons SsoPox and other enzymes of the same family appear good candidates for engineering approaches aimed at biotechnological applications in the industrial field.
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One of the promising applications is the use of PLLs (Sso Pox) for enzymatic detoxification of Ops. This has become the subject of many studies because alternative methods of removing them, such as bleach treatments and incineration are impractical due to high costs or environmental concerns. OPs are toxic compounds for all vertebrates because they irreversibly inhibit acetylcholinesterase, a key enzyme of the nervous system. They have been distributed globally since the end of WorldWar II and their toxic properties have also been exploited for the development of chemical warfare agents such as sarin, soman and VX as well as for the production of agricultural insecticides.
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One of the promising applications is the use of PLLs (Sso Pox) for enzymatic detoxification of Ops. This has become the subject of many studies because alternative methods of removing them, such as bleach treatments and incineration are impractical due to high costs or environmental concerns. OPs are toxic compounds for all vertebrates because they irreversibly inhibit acetylcholinesterase, a key enzyme of the nervous system. They have been distributed globally since the end of WorldWar II and their toxic properties have also been exploited for the development of chemical warfare agents such as sarin, soman and VX as well as for the production of agricultural insecticides <ref>PMID:19098922</ref> .
For this application, enzymes that catalyse the hydrolysis of phosphoester bonds in OPs represent an excellent bio-based solution.
For this application, enzymes that catalyse the hydrolysis of phosphoester bonds in OPs represent an excellent bio-based solution.
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==3D structures of SsoPox==
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[[2vc7]] – SsPON + thiophenium derivative + Co + Fe – ''Sulfolobus solfataricus''<br />
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[[2vc5]] – SsPON + Co + Fe<br />
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</StructureSection>
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== References ==
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<references/>

Current revision

Phosphotriesterase-Like Lactonase (PLL)

3D Structure of SsoPox wild type (PDB ID 2vc5)

Drag the structure with the mouse to rotate

References

  1. 1.0 1.1 Merone L, Mandrich L, Rossi M, Manco G. A thermostable phosphotriesterase from the archaeon Sulfolobus solfataricus: cloning, overexpression and properties. Extremophiles. 2005 Aug;9(4):297-305. Epub 2005 May 21. PMID:15909078 doi:10.1007/s00792-005-0445-4
  2. 2.0 2.1 Porzio E, Merone L, Mandrich L, Rossi M, Manco G. A new phosphotriesterase from Sulfolobus acidocaldarius and its comparison with the homologue from Sulfolobus solfataricus. Biochimie. 2007 May;89(5):625-36. Epub 2007 Jan 27. PMID:17337320 doi:http://dx.doi.org/10.1016/j.biochi.2007.01.007
  3. 3.0 3.1 Afriat L, Roodveldt C, Manco G, Tawfik DS. The latent promiscuity of newly identified microbial lactonases is linked to a recently diverged phosphotriesterase. Biochemistry. 2006 Nov 21;45(46):13677-86. PMID:17105187 doi:http://dx.doi.org/10.1021/bi061268r
  4. Elias M, Dupuy J, Merone L, Mandrich L, Porzio E, Moniot S, Rochu D, Lecomte C, Rossi M, Masson P, Manco G, Chabriere E. Structural basis for natural lactonase and promiscuous phosphotriesterase activities. J Mol Biol. 2008 Jun 20;379(5):1017-28. Epub 2008 Apr 16. PMID:18486146 doi:10.1016/j.jmb.2008.04.022
  5. Roodveldt C, Tawfik DS. Shared promiscuous activities and evolutionary features in various members of the amidohydrolase superfamily. Biochemistry. 2005 Sep 27;44(38):12728-36. PMID:16171387 doi:http://dx.doi.org/10.1021/bi051021e
  6. Singh BK. Organophosphorus-degrading bacteria: ecology and industrial applications. Nat Rev Microbiol. 2009 Feb;7(2):156-64. doi: 10.1038/nrmicro2050. Epub 2008 Dec , 22. PMID:19098922 doi:http://dx.doi.org/10.1038/nrmicro2050

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