1z2k

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[[Image:1z2k.gif|left|200px]]
 
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{{Structure
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==NMR structure of the D1 domain of the Natural Killer Cell Receptor, 2B4==
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|PDB= 1z2k |SIZE=350|CAPTION= <scene name='initialview01'>1z2k</scene>
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<StructureSection load='1z2k' size='340' side='right'caption='[[1z2k]]' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND=
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<table><tr><td colspan='2'>[[1z2k]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z2K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Z2K FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 14 models</td></tr>
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|GENE= Cd244, 2b4, Nmrk ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 Mus musculus])
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1z2k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z2k OCA], [https://pdbe.org/1z2k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1z2k RCSB], [https://www.ebi.ac.uk/pdbsum/1z2k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1z2k ProSAT]</span></td></tr>
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|DOMAIN=
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</table>
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|RELATEDENTRY=
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== Function ==
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1z2k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z2k OCA], [http://www.ebi.ac.uk/pdbsum/1z2k PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1z2k RCSB]</span>
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[https://www.uniprot.org/uniprot/CD244_MOUSE CD244_MOUSE] Modulate other receptor-ligand interactions to enhance leukocyte activation (By similarity).
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}}
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z2/1z2k_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1z2k ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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2B4, a transmembrane receptor expressed primarily on natural killer (NK) cells and on a subset of CD8(+) T cells, plays an important role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells. We report here the atomic-resolution structure of the ligand-binding (D1) domain of 2B4 in solution determined by nuclear magnetic resonance (NMR) spectroscopy. The overall main chain structure resembles an immunoglobulin variable (V) domain fold, very similar to that seen previously for domain 1 of CD2 and CD4. The structure contains nine beta-strands assembled into two beta-sheets conventionally labeled DEB and AGFCC'C' '. The six-stranded sheet (AGFCC'C' ') contains structural features that may have implications for ligand recognition and receptor function. A noncanonical disulfide bridge between Cys2 and Cys99 stabilizes a long and parallel beta-structure between strand A (residues 3-12) and strand G (residues 100-108). A beta-bulge at residues Glu45 and Ile46 places a bend in the middle of strand C' that orients two conserved and adjacent hydrophobic residues (Ile46 and Leu47) inside the beta-sandwich as seen in other V domains. Finally, the FG-loop (implicated in ligand recognition in the CD2-CD58 complex) is dynamically disordered in 2B4 in the absence of a ligand. We propose that ligand binding to 2B4 might stabilize the structure of the FG-loop in the ligand complex.
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'''NMR structure of the D1 domain of the Natural Killer Cell Receptor, 2B4'''
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NMR structure of the natural killer cell receptor 2B4 (CD244): implications for ligand recognition.,Ames JB, Vyas V, Lusin JD, Mariuzza R Biochemistry. 2005 May 3;44(17):6416-23. PMID:15850375<ref>PMID:15850375</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 1z2k" style="background-color:#fffaf0;"></div>
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==Overview==
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==See Also==
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2B4, a transmembrane receptor expressed primarily on natural killer (NK) cells and on a subset of CD8(+) T cells, plays an important role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells. We report here the atomic-resolution structure of the ligand-binding (D1) domain of 2B4 in solution determined by nuclear magnetic resonance (NMR) spectroscopy. The overall main chain structure resembles an immunoglobulin variable (V) domain fold, very similar to that seen previously for domain 1 of CD2 and CD4. The structure contains nine beta-strands assembled into two beta-sheets conventionally labeled DEB and AGFCC'C' '. The six-stranded sheet (AGFCC'C' ') contains structural features that may have implications for ligand recognition and receptor function. A noncanonical disulfide bridge between Cys2 and Cys99 stabilizes a long and parallel beta-structure between strand A (residues 3-12) and strand G (residues 100-108). A beta-bulge at residues Glu45 and Ile46 places a bend in the middle of strand C' that orients two conserved and adjacent hydrophobic residues (Ile46 and Leu47) inside the beta-sandwich as seen in other V domains. Finally, the FG-loop (implicated in ligand recognition in the CD2-CD58 complex) is dynamically disordered in 2B4 in the absence of a ligand. We propose that ligand binding to 2B4 might stabilize the structure of the FG-loop in the ligand complex.
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*[[NK cell receptor|NK cell receptor]]
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== References ==
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==About this Structure==
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<references/>
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1Z2K is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z2K OCA].
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__TOC__
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</StructureSection>
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==Reference==
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[[Category: Large Structures]]
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NMR structure of the natural killer cell receptor 2B4 (CD244): implications for ligand recognition., Ames JB, Vyas V, Lusin JD, Mariuzza R, Biochemistry. 2005 May 3;44(17):6416-23. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15850375 15850375]
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[[Category: Mus musculus]]
[[Category: Mus musculus]]
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[[Category: Single protein]]
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[[Category: Ames JB]]
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[[Category: Ames, J B.]]
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[[Category: Lusin JD]]
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[[Category: Lusin, J D.]]
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[[Category: Mariuzza R]]
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[[Category: Mariuzza, R.]]
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[[Category: Vyas V]]
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[[Category: Vyas, V.]]
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[[Category: beta sandwich]]
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[[Category: immunoglobulin motif]]
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[[Category: natural killer cell receptor]]
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[[Category: v-domain]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:28:09 2008''
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Current revision

NMR structure of the D1 domain of the Natural Killer Cell Receptor, 2B4

PDB ID 1z2k

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