1z3d

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[[Image:1z3d.gif|left|200px]]
 
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{{Structure
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==Protein crystal growth improvement leading to the 2.5A crystallographic structure of ubiquitin-conjugating enzyme (ubc-1) from Caenorhabditis elegans==
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|PDB= 1z3d |SIZE=350|CAPTION= <scene name='initialview01'>1z3d</scene>, resolution 2.50&Aring;
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<StructureSection load='1z3d' size='340' side='right'caption='[[1z3d]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND=
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<table><tr><td colspan='2'>[[1z3d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z3D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Z3D FirstGlance]. <br>
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Ubiquitin--protein_ligase Ubiquitin--protein ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.19 6.3.2.19] </span>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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|GENE= ubc-1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6239 Caenorhabditis elegans])
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1z3d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z3d OCA], [https://pdbe.org/1z3d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1z3d RCSB], [https://www.ebi.ac.uk/pdbsum/1z3d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1z3d ProSAT]</span></td></tr>
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00195 UBCc]</span>
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</table>
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|RELATEDENTRY=
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== Function ==
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1z3d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z3d OCA], [http://www.ebi.ac.uk/pdbsum/1z3d PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1z3d RCSB]</span>
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[https://www.uniprot.org/uniprot/UBC1_CAEEL UBC1_CAEEL] Catalyzes the covalent attachment of ubiquitin to other proteins.
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}}
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z3/1z3d_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1z3d ConSurf].
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<div style="clear:both"></div>
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'''Protein crystal growth improvement leading to the 2.5A crystallographic structure of ubiquitin-conjugating enzyme (ubc-1) from Caenorhabditis elegans'''
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==See Also==
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*[[3D structures of ubiquitin conjugating enzyme|3D structures of ubiquitin conjugating enzyme]]
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__TOC__
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==About this Structure==
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</StructureSection>
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1Z3D is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z3D OCA].
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[[Category: Caenorhabditis elegans]]
[[Category: Caenorhabditis elegans]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Ubiquitin--protein ligase]]
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[[Category: DiGiammarino E]]
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[[Category: DiGiammarino, E.]]
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[[Category: Gavira JA]]
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[[Category: Gavira, J A.]]
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[[Category: Liu ZJ]]
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[[Category: Liu, Z J.]]
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[[Category: Meehan E]]
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[[Category: Meehan, E.]]
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[[Category: Ng JD]]
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[[Category: Ng, J D.]]
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[[Category: Tempel W]]
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[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
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[[Category: Toh D]]
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[[Category: Tempel, W.]]
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[[Category: Wang BC]]
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[[Category: Toh, D.]]
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[[Category: Wang, B C.]]
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[[Category: crystal growth]]
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[[Category: e2]]
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[[Category: protein structure initiative]]
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[[Category: psi]]
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[[Category: secsg]]
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[[Category: southeast collaboratory for structural genomic]]
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[[Category: structural genomic]]
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[[Category: ubiquitin-conjugating]]
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[[Category: ubiquitination]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:28:27 2008''
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Current revision

Protein crystal growth improvement leading to the 2.5A crystallographic structure of ubiquitin-conjugating enzyme (ubc-1) from Caenorhabditis elegans

PDB ID 1z3d

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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