This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2etd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:43, 25 January 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of a lema protein (tm0961) from thermotoga maritima msb8 at 2.28 A resolution==
==Crystal structure of a lema protein (tm0961) from thermotoga maritima msb8 at 2.28 A resolution==
-
<StructureSection load='2etd' size='340' side='right' caption='[[2etd]], [[Resolution|resolution]] 2.28&Aring;' scene=''>
+
<StructureSection load='2etd' size='340' side='right'caption='[[2etd]], [[Resolution|resolution]] 2.28&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2etd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thema Thema]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ETD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ETD FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2etd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima_MSB8 Thermotoga maritima MSB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ETD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ETD FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2etd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2etd OCA], [https://pdbe.org/2etd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2etd RCSB], [https://www.ebi.ac.uk/pdbsum/2etd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2etd ProSAT], [https://www.topsan.org/Proteins/JCSG/2etd TOPSAN]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">tm0961 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243274 THEMA])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2etd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2etd OCA], [http://pdbe.org/2etd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2etd RCSB], [http://www.ebi.ac.uk/pdbsum/2etd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2etd ProSAT], [http://www.topsan.org/Proteins/JCSG/2etd TOPSAN]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9X056_THEMA Q9X056_THEMA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/et/2etd_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/et/2etd_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 21: Line 21:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Thema]]
+
[[Category: Large Structures]]
-
[[Category: Structural genomic]]
+
[[Category: Thermotoga maritima MSB8]]
-
[[Category: Bromodomain-like fold]]
+
-
[[Category: Jcsg]]
+
-
[[Category: Membrane protein]]
+
-
[[Category: PSI, Protein structure initiative]]
+

Current revision

Crystal structure of a lema protein (tm0961) from thermotoga maritima msb8 at 2.28 A resolution

PDB ID 2etd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools