1za7

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[[Image:1za7.gif|left|200px]]
 
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{{Structure
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==The crystal structure of salt stable cowpea cholorotic mottle virus at 2.7 angstroms resolution.==
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|PDB= 1za7 |SIZE=350|CAPTION= <scene name='initialview01'>1za7</scene>, resolution 2.70&Aring;
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<StructureSection load='1za7' size='340' side='right'caption='[[1za7]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND=
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<table><tr><td colspan='2'>[[1za7]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Cowpea_chlorotic_mottle_virus Cowpea chlorotic mottle virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZA7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZA7 FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
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|GENE= RNA4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=12303 Cowpea chlorotic mottle virus])
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1za7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1za7 OCA], [https://pdbe.org/1za7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1za7 RCSB], [https://www.ebi.ac.uk/pdbsum/1za7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1za7 ProSAT]</span></td></tr>
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|DOMAIN=
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</table>
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|RELATEDENTRY=[[1cwp|1cwp]]
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== Function ==
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1za7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1za7 OCA], [http://www.ebi.ac.uk/pdbsum/1za7 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1za7 RCSB]</span>
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[https://www.uniprot.org/uniprot/CAPSD_CCMV CAPSD_CCMV] Capsid protein. Probably binds RNA and plays a role in packaging.<ref>PMID:15731222</ref>
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}}
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Structural transitions in viral capsids play a critical role in the virus life cycle, including assembly, disassembly, and release of the packaged nucleic acid. Cowpea chlorotic mottle virus (CCMV) undergoes a well-studied reversible structural expansion in vitro in which the capsid expands by 10%. The swollen form of the particle can be completely disassembled by increasing the salt concentration to 1 M. Remarkably, a single-residue mutant of the CCMV N-terminal arm, K42R, is not susceptible to dissociation in high salt (salt-stable CCMV [SS-CCMV]) and retains 70% of wild-type infectivity. We present the combined structural and biophysical basis for the chemical stability and viability of the SS-CCMV particles. A 2.7-A resolution crystal structure of the SS-CCMV capsid shows an addition of 660 new intersubunit interactions per particle at the center of the 20 hexameric capsomeres, which are a direct result of the K42R mutation. Protease-based mapping experiments of intact particles demonstrate that both the swollen and closed forms of the wild-type and SS-CCMV particles have highly dynamic N-terminal regions, yet the SS-CCMV particles are more resistant to degradation. Thus, the increase in SS-CCMV particle stability is a result of concentrated tethering of subunits at a local symmetry interface (i.e., quasi-sixfold axes) that does not interfere with the function of other key symmetry interfaces (i.e., fivefold, twofold, quasi-threefold axes). The result is a particle that is still dynamic but insensitive to high salt due to a new series of bonds that are resistant to high ionic strength and preserve the overall particle structure.
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'''The crystal structure of salt stable cowpea cholorotic mottle virus at 2.7 angstroms resolution.'''
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Enhanced local symmetry interactions globally stabilize a mutant virus capsid that maintains infectivity and capsid dynamics.,Speir JA, Bothner B, Qu C, Willits DA, Young MJ, Johnson JE J Virol. 2006 Apr;80(7):3582-91. PMID:16537626<ref>PMID:16537626</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 1za7" style="background-color:#fffaf0;"></div>
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==Overview==
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==See Also==
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Structural transitions in viral capsids play a critical role in the virus life cycle, including assembly, disassembly, and release of the packaged nucleic acid. Cowpea chlorotic mottle virus (CCMV) undergoes a well-studied reversible structural expansion in vitro in which the capsid expands by 10%. The swollen form of the particle can be completely disassembled by increasing the salt concentration to 1 M. Remarkably, a single-residue mutant of the CCMV N-terminal arm, K42R, is not susceptible to dissociation in high salt (salt-stable CCMV [SS-CCMV]) and retains 70% of wild-type infectivity. We present the combined structural and biophysical basis for the chemical stability and viability of the SS-CCMV particles. A 2.7-A resolution crystal structure of the SS-CCMV capsid shows an addition of 660 new intersubunit interactions per particle at the center of the 20 hexameric capsomeres, which are a direct result of the K42R mutation. Protease-based mapping experiments of intact particles demonstrate that both the swollen and closed forms of the wild-type and SS-CCMV particles have highly dynamic N-terminal regions, yet the SS-CCMV particles are more resistant to degradation. Thus, the increase in SS-CCMV particle stability is a result of concentrated tethering of subunits at a local symmetry interface (i.e., quasi-sixfold axes) that does not interfere with the function of other key symmetry interfaces (i.e., fivefold, twofold, quasi-threefold axes). The result is a particle that is still dynamic but insensitive to high salt due to a new series of bonds that are resistant to high ionic strength and preserve the overall particle structure.
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*[[Cowpea Chlorotic Mottle Virus|Cowpea Chlorotic Mottle Virus]]
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*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
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==About this Structure==
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== References ==
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1ZA7 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Cowpea_chlorotic_mottle_virus Cowpea chlorotic mottle virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZA7 OCA].
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<references/>
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__TOC__
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==Reference==
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</StructureSection>
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Enhanced local symmetry interactions globally stabilize a mutant virus capsid that maintains infectivity and capsid dynamics., Speir JA, Bothner B, Qu C, Willits DA, Young MJ, Johnson JE, J Virol. 2006 Apr;80(7):3582-91. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16537626 16537626]
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[[Category: Cowpea chlorotic mottle virus]]
[[Category: Cowpea chlorotic mottle virus]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Bothner, B.]]
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[[Category: Bothner B]]
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[[Category: Johnson, J E.]]
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[[Category: Johnson JE]]
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[[Category: Qu, C.]]
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[[Category: Qu C]]
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[[Category: Speir, J A.]]
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[[Category: Speir JA]]
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[[Category: Willits, D A.]]
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[[Category: Willits DA]]
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[[Category: Young, M J.]]
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[[Category: Young MJ]]
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[[Category: beta barrel]]
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[[Category: beta hexamer]]
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[[Category: bromovirus]]
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[[Category: icosahedral particle]]
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[[Category: icosahedral virus]]
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[[Category: mutant virus capsid structure]]
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[[Category: point mutation]]
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[[Category: stable mutant]]
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[[Category: stablizing mutation]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:33:04 2008''
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Current revision

The crystal structure of salt stable cowpea cholorotic mottle virus at 2.7 angstroms resolution.

PDB ID 1za7

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