1zcc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:03, 14 February 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1zcc.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of glycerophosphodiester phosphodiesterase from Agrobacterium tumefaciens str.C58==
-
|PDB= 1zcc |SIZE=350|CAPTION= <scene name='initialview01'>1zcc</scene>, resolution 2.50&Aring;
+
<StructureSection load='1zcc' size='340' side='right'caption='[[1zcc]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
+
<table><tr><td colspan='2'>[[1zcc]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZCC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZCC FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam03009 GDPD], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG0584 UgpQ]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zcc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zcc OCA], [https://pdbe.org/1zcc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zcc RCSB], [https://www.ebi.ac.uk/pdbsum/1zcc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zcc ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1zcc TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zcc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zcc OCA], [http://www.ebi.ac.uk/pdbsum/1zcc PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1zcc RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/A9CG82_AGRFC A9CG82_AGRFC]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zc/1zcc_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zcc ConSurf].
 +
<div style="clear:both"></div>
-
'''Crystal structure of glycerophosphodiester phosphodiesterase from Agrobacterium tumefaciens str.C58'''
+
==See Also==
-
 
+
*[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
1ZCC is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZCC OCA].
+
[[Category: Agrobacterium fabrum str. C58]]
-
 
+
[[Category: Large Structures]]
-
==Reference==
+
[[Category: Burley SK]]
-
Crystal structure of glycerophosphodiester phosphodiesterase from Agrobacterium tumefaciens by SAD with a large asymmetric unit., Rao KN, Bonanno JB, Burley SK, Swaminathan S, Proteins. 2006 Nov 1;65(2):514-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16909422 16909422]
+
[[Category: Krishnamurthy NR]]
-
[[Category: Agrobacterium tumefaciens]]
+
[[Category: Kumaran D]]
-
[[Category: Single protein]]
+
[[Category: Swaminathan S]]
-
[[Category: Burley, S K.]]
+
-
[[Category: Krishnamurthy, N R.]]
+
-
[[Category: Kumaran, D.]]
+
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
-
[[Category: Swaminathan, S.]]
+
-
[[Category: agrobacterium tumefaciens str. c58]]
+
-
[[Category: glycerophosphodiester phosphodiesterase]]
+
-
[[Category: new york structural genomix research consortium]]
+
-
[[Category: nysgxrc]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi]]
+
-
[[Category: structural genomic]]
+
-
[[Category: t2047]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:33:55 2008''
+

Current revision

Crystal structure of glycerophosphodiester phosphodiesterase from Agrobacterium tumefaciens str.C58

PDB ID 1zcc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1zcc"
Personal tools