3epr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:48, 21 February 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of putative HAD superfamily hydrolase from Streptococcus agalactiae.==
==Crystal structure of putative HAD superfamily hydrolase from Streptococcus agalactiae.==
-
<StructureSection load='3epr' size='340' side='right' caption='[[3epr]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
+
<StructureSection load='3epr' size='340' side='right'caption='[[3epr]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3epr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_agalactiae_(serotype_v) Streptococcus agalactiae (serotype v)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EPR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3EPR FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3epr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_agalactiae_serogroup_V Streptococcus agalactiae serogroup V]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EPR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EPR FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.55&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SAG0892 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=216466 Streptococcus agalactiae (serotype V)])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3epr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3epr OCA], [http://pdbe.org/3epr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3epr RCSB], [http://www.ebi.ac.uk/pdbsum/3epr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3epr ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/3epr TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3epr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3epr OCA], [https://pdbe.org/3epr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3epr RCSB], [https://www.ebi.ac.uk/pdbsum/3epr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3epr ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3epr TOPSAN]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8E044_STRA5 Q8E044_STRA5]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ep/3epr_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ep/3epr_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 20: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Almo, S C]]
+
[[Category: Large Structures]]
-
[[Category: Burley, S K]]
+
[[Category: Streptococcus agalactiae serogroup V]]
-
[[Category: Dickey, M]]
+
[[Category: Almo SC]]
-
[[Category: Groshong, C]]
+
[[Category: Burley SK]]
-
[[Category: Structural genomic]]
+
[[Category: Dickey M]]
-
[[Category: Ramagopal, U A]]
+
[[Category: Groshong C]]
-
[[Category: Rodgers, L]]
+
[[Category: Ramagopal UA]]
-
[[Category: Tang, B K]]
+
[[Category: Rodgers L]]
-
[[Category: Toro, R]]
+
[[Category: Tang BK]]
-
[[Category: Had superfamily hydrolase]]
+
[[Category: Toro R]]
-
[[Category: Hydrolase]]
+
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Unknown function]]
+

Current revision

Crystal structure of putative HAD superfamily hydrolase from Streptococcus agalactiae.

PDB ID 3epr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools