This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5im6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:01, 30 August 2023) (edit) (undo)
 
Line 1: Line 1:
-
{{Large structure}}
+
 
==Crystal structure of designed two-component self-assembling icosahedral cage I32-28==
==Crystal structure of designed two-component self-assembling icosahedral cage I32-28==
-
<StructureSection load='5im6' size='340' side='right' caption='[[5im6]], [[Resolution|resolution]] 5.59&Aring;' scene=''>
+
<StructureSection load='5im6' size='340' side='right'caption='[[5im6]], [[Resolution|resolution]] 5.59&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5im6]] is a 40 chain structure with sequence from [http://en.wikipedia.org/wiki/Burta Burta] and [http://en.wikipedia.org/wiki/Deira Deira]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IM6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5IM6 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5im6]] is a 40 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_thailandensis_E264 Burkholderia thailandensis E264] and [https://en.wikipedia.org/wiki/Deinococcus_radiodurans_R1 Deinococcus radiodurans R1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IM6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5IM6 FirstGlance]. <br>
-
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BTH_I1293, DR63_1050 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=271848 BURTA]), DR_2006 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243230 DEIRA])</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 5.588&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5im6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5im6 OCA], [http://pdbe.org/5im6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5im6 RCSB], [http://www.ebi.ac.uk/pdbsum/5im6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5im6 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5im6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5im6 OCA], [https://pdbe.org/5im6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5im6 RCSB], [https://www.ebi.ac.uk/pdbsum/5im6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5im6 ProSAT]</span></td></tr>
</table>
</table>
-
{{Large structure}}
+
== Function ==
 +
[https://www.uniprot.org/uniprot/Q2SZ09_BURTA Q2SZ09_BURTA]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Burta]]
+
[[Category: Burkholderia thailandensis E264]]
-
[[Category: Deira]]
+
[[Category: Deinococcus radiodurans R1]]
-
[[Category: Baker, D]]
+
[[Category: Large Structures]]
-
[[Category: Bale, J B]]
+
[[Category: Baker D]]
-
[[Category: Cascio, D]]
+
[[Category: Bale JB]]
-
[[Category: Collazo, M J]]
+
[[Category: Cascio D]]
-
[[Category: King, N P]]
+
[[Category: Collazo MJ]]
-
[[Category: Liu, Y A]]
+
[[Category: King NP]]
-
[[Category: Sawaya, M R]]
+
[[Category: Liu YA]]
-
[[Category: Sheffler, W]]
+
[[Category: Sawaya MR]]
-
[[Category: Thomas, C]]
+
[[Category: Sheffler W]]
-
[[Category: Yeates, T O]]
+
[[Category: Thomas C]]
-
[[Category: Co-assembling]]
+
[[Category: Yeates TO]]
-
[[Category: Computational design]]
+
-
[[Category: Designed protein cage]]
+
-
[[Category: Icosahedron]]
+
-
[[Category: Multimerization]]
+
-
[[Category: Nanomaterial]]
+
-
[[Category: Nanostructure]]
+
-
[[Category: Protein binding]]
+
-
[[Category: Protein engineering]]
+
-
[[Category: Rosetta]]
+
-
[[Category: Self-assembling]]
+
-
[[Category: Symmetry]]
+
-
[[Category: Two-component]]
+

Current revision

Crystal structure of designed two-component self-assembling icosahedral cage I32-28

PDB ID 5im6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools