5oq3

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==High resolution structure of the functional region of Cwp19 from Clostridium difficile==
==High resolution structure of the functional region of Cwp19 from Clostridium difficile==
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<StructureSection load='5oq3' size='340' side='right' caption='[[5oq3]], [[Resolution|resolution]] 1.35&Aring;' scene=''>
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<StructureSection load='5oq3' size='340' side='right'caption='[[5oq3]], [[Resolution|resolution]] 1.35&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5oq3]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OQ3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5OQ3 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5oq3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridioides_difficile Clostridioides difficile]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OQ3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5OQ3 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.35&#8491;</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/N-acetylmuramoyl-L-alanine_amidase N-acetylmuramoyl-L-alanine amidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.28 3.5.1.28] </span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5oq3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5oq3 OCA], [http://pdbe.org/5oq3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5oq3 RCSB], [http://www.ebi.ac.uk/pdbsum/5oq3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5oq3 ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5oq3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5oq3 OCA], [https://pdbe.org/5oq3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5oq3 RCSB], [https://www.ebi.ac.uk/pdbsum/5oq3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5oq3 ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/L7PGA3_CLODI L7PGA3_CLODI]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Clostridium difficile is a burden to health care systems around the world, causing tens of thousands of deaths annually. The S-layer of the bacterium, a layer of protein found of the surface of cells, has received a significant amount of attention over the past two decades as a potential target to combat the growing threat presented by C. difficile infections. The S-layer contains a wide range of proteins, each of which possess three cell wall binding domains, while many also possess a "functional" region. Here, we present the high resolution structure of the functional region of one such protein, Cwp19 along with preliminary functional characterisation of the predicted glycoside hydrolase. Cwp19 has a TIM barrel fold and appears to possess a high degree of substrate selectivity. The protein also exhibits peptidoglycan hydrolase activity an order of magnitude slower than that of lysozyme and is the first member of glycoside hydrolase-like family 10 to be characterised. This research goes some way to understanding the role of Cwp19 in the S-layer of C. difficile. This article is protected by copyright. All rights reserved.
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The molecular structure of the glycoside hydrolase domain of Cwp19 from Clostridium difficile.,Bradshaw WJ, Kirby JM, Roberts AK, Shone CC, Acharya KR FEBS J. 2017 Oct 30. doi: 10.1111/febs.14310. PMID:29083543<ref>PMID:29083543</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 5oq3" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: N-acetylmuramoyl-L-alanine amidase]]
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[[Category: Clostridioides difficile]]
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[[Category: Acharya, K R]]
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[[Category: Large Structures]]
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[[Category: Bradshaw, W J]]
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[[Category: Acharya KR]]
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[[Category: Kirby, J M]]
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[[Category: Bradshaw WJ]]
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[[Category: Roberts, A K]]
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[[Category: Kirby JM]]
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[[Category: Shone, C C]]
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[[Category: Roberts AK]]
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[[Category: Glycoside hydrolase]]
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[[Category: Shone CC]]
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[[Category: Hydrolase]]
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[[Category: S-layer]]
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[[Category: Tim barrel]]
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Current revision

High resolution structure of the functional region of Cwp19 from Clostridium difficile

PDB ID 5oq3

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