3gdo

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==Crystal structure of putative oxidoreductase yvaA from Bacillus subtilis==
==Crystal structure of putative oxidoreductase yvaA from Bacillus subtilis==
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<StructureSection load='3gdo' size='340' side='right' caption='[[3gdo]], [[Resolution|resolution]] 2.03&Aring;' scene=''>
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<StructureSection load='3gdo' size='340' side='right'caption='[[3gdo]], [[Resolution|resolution]] 2.03&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3gdo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacsu Bacsu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GDO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GDO FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3gdo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GDO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GDO FirstGlance]. <br>
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</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3gfg|3gfg]]</td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.03&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BSU33530, yvaA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224308 BACSU])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gdo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gdo OCA], [https://pdbe.org/3gdo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gdo RCSB], [https://www.ebi.ac.uk/pdbsum/3gdo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gdo ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gdo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gdo OCA], [http://pdbe.org/3gdo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gdo RCSB], [http://www.ebi.ac.uk/pdbsum/3gdo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3gdo ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/IOLW_BACSU IOLW_BACSU]] Catalyzes the NADP(+)-dependent oxidation of scyllo-inositol to 2,4,6/3,5-pentahydroxycyclohexanone (scyllo-inosose).<ref>PMID:20133360</ref>
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[https://www.uniprot.org/uniprot/IOLW_BACSU IOLW_BACSU] Catalyzes the NADP(+)-dependent oxidation of scyllo-inositol to 2,4,6/3,5-pentahydroxycyclohexanone (scyllo-inosose).<ref>PMID:20133360</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gd/3gdo_consurf.spt"</scriptWhenChecked>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gd/3gdo_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gdo ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gdo ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
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==See Also==
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*[[Glucanase 3D structures|Glucanase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Bacsu]]
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[[Category: Bacillus subtilis subsp. subtilis str. 168]]
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[[Category: Almo, S C]]
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[[Category: Large Structures]]
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[[Category: Burley, S K]]
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[[Category: Almo SC]]
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[[Category: Structural genomic]]
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[[Category: Burley SK]]
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[[Category: Ramagopal, U A]]
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[[Category: Ramagopal UA]]
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[[Category: Toro, R]]
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[[Category: Toro R]]
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[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
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[[Category: Oxidoreductase]]
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[[Category: PSI, Protein structure initiative]]
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[[Category: Putative oxidoreductase yvaa]]
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Current revision

Crystal structure of putative oxidoreductase yvaA from Bacillus subtilis

PDB ID 3gdo

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OCA

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