3gfg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:05, 6 September 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Structure of putative oxidoreductase yvaA from Bacillus subtilis in triclinic form==
==Structure of putative oxidoreductase yvaA from Bacillus subtilis in triclinic form==
-
<StructureSection load='3gfg' size='340' side='right' caption='[[3gfg]], [[Resolution|resolution]] 2.59&Aring;' scene=''>
+
<StructureSection load='3gfg' size='340' side='right'caption='[[3gfg]], [[Resolution|resolution]] 2.59&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3gfg]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacsu Bacsu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GFG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GFG FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3gfg]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GFG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GFG FirstGlance]. <br>
-
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3gdo|3gdo]]</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.59&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BSU33530, yvaA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224308 BACSU])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gfg OCA], [https://pdbe.org/3gfg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gfg RCSB], [https://www.ebi.ac.uk/pdbsum/3gfg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gfg ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3gfg TOPSAN]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gfg OCA], [http://pdbe.org/3gfg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gfg RCSB], [http://www.ebi.ac.uk/pdbsum/3gfg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3gfg ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/3gfg TOPSAN]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/IOLW_BACSU IOLW_BACSU]] Catalyzes the NADP(+)-dependent oxidation of scyllo-inositol to 2,4,6/3,5-pentahydroxycyclohexanone (scyllo-inosose).<ref>PMID:20133360</ref>
+
[https://www.uniprot.org/uniprot/IOLW_BACSU IOLW_BACSU] Catalyzes the NADP(+)-dependent oxidation of scyllo-inositol to 2,4,6/3,5-pentahydroxycyclohexanone (scyllo-inosose).<ref>PMID:20133360</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gf/3gfg_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gf/3gfg_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 24: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacsu]]
+
[[Category: Bacillus subtilis subsp. subtilis str. 168]]
-
[[Category: Almo, S C]]
+
[[Category: Large Structures]]
-
[[Category: Burley, S K]]
+
[[Category: Almo SC]]
-
[[Category: Chang, S]]
+
[[Category: Burley SK]]
-
[[Category: Gilmore, M]]
+
[[Category: Chang S]]
-
[[Category: Structural genomic]]
+
[[Category: Gilmore M]]
-
[[Category: Ramagopal, U A]]
+
[[Category: Ramagopal UA]]
-
[[Category: Toro, R]]
+
[[Category: Toro R]]
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Putative oxidoreductase yvaa]]
+

Current revision

Structure of putative oxidoreductase yvaA from Bacillus subtilis in triclinic form

PDB ID 3gfg

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools