3hrl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:58, 6 November 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of a putative endonuclease-like protein (ngo0050) from neisseria gonorrhoeae==
==Crystal structure of a putative endonuclease-like protein (ngo0050) from neisseria gonorrhoeae==
-
<StructureSection load='3hrl' size='340' side='right' caption='[[3hrl]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
+
<StructureSection load='3hrl' size='340' side='right'caption='[[3hrl]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3hrl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Neig1 Neig1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HRL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HRL FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3hrl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Neisseria_gonorrhoeae_FA_1090 Neisseria gonorrhoeae FA 1090]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HRL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HRL FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NGO0050 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242231 NEIG1])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hrl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hrl OCA], [https://pdbe.org/3hrl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hrl RCSB], [https://www.ebi.ac.uk/pdbsum/3hrl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hrl ProSAT], [https://www.topsan.org/Proteins/MCSG/3hrl TOPSAN]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hrl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hrl OCA], [http://pdbe.org/3hrl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3hrl RCSB], [http://www.ebi.ac.uk/pdbsum/3hrl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3hrl ProSAT], [http://www.topsan.org/Proteins/MCSG/3hrl TOPSAN]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q5FAH0_NEIG1 Q5FAH0_NEIG1]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hr/3hrl_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hr/3hrl_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 21: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Neig1]]
+
[[Category: Large Structures]]
-
[[Category: Anderson, W F]]
+
[[Category: Neisseria gonorrhoeae FA 1090]]
-
[[Category: Cobb, G]]
+
[[Category: Anderson WF]]
-
[[Category: Filippova, E V]]
+
[[Category: Cobb G]]
-
[[Category: Joachimiak, A]]
+
[[Category: Filippova EV]]
-
[[Category: Kiryukhina, O]]
+
[[Category: Joachimiak A]]
-
[[Category: Structural genomic]]
+
[[Category: Kiryukhina O]]
-
[[Category: Minasov, G]]
+
[[Category: Minasov G]]
-
[[Category: Shuvalova, L]]
+
[[Category: Shuvalova L]]
-
[[Category: Endonuclease]]
+
-
[[Category: Mcsg]]
+
-
[[Category: Neisseria gonorrhoeae]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Unknown function]]
+

Current revision

Crystal structure of a putative endonuclease-like protein (ngo0050) from neisseria gonorrhoeae

PDB ID 3hrl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools