This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ier

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:45, 6 September 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Firefly luciferase apo structure (P41 form) with PEG 400 bound==
==Firefly luciferase apo structure (P41 form) with PEG 400 bound==
-
<StructureSection load='3ier' size='340' side='right' caption='[[3ier]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
+
<StructureSection load='3ier' size='340' side='right'caption='[[3ier]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3ier]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Photinus_pyralis Photinus pyralis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IER OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IER FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3ier]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Photinus_pyralis Photinus pyralis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IER OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IER FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3iep|3iep]], [[3ies|3ies]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photinus-luciferin_4-monooxygenase_(ATP-hydrolyzing) Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.12.7 1.13.12.7] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ier FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ier OCA], [https://pdbe.org/3ier PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ier RCSB], [https://www.ebi.ac.uk/pdbsum/3ier PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ier ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ier FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ier OCA], [http://pdbe.org/3ier PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ier RCSB], [http://www.ebi.ac.uk/pdbsum/3ier PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ier ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/LUCI_PHOPY LUCI_PHOPY]] Produces green light with a wavelength of 562 nm.
+
[https://www.uniprot.org/uniprot/LUCI_PHOPY LUCI_PHOPY] Produces green light with a wavelength of 562 nm.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ie/3ier_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ie/3ier_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 30: Line 29:
</div>
</div>
<div class="pdbe-citations 3ier" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 3ier" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Luciferase 3D structures|Luciferase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Photinus pyralis]]
[[Category: Photinus pyralis]]
-
[[Category: Auld, D S]]
+
[[Category: Auld DS]]
-
[[Category: Battaile, K P]]
+
[[Category: Battaile KP]]
-
[[Category: Hanzlik, R P]]
+
[[Category: Hanzlik RP]]
-
[[Category: Inglese, J]]
+
[[Category: Inglese J]]
-
[[Category: Lea, W A]]
+
[[Category: Lea WA]]
-
[[Category: Lovell, S]]
+
[[Category: Lovell S]]
-
[[Category: Maloney, D J]]
+
[[Category: Maloney DJ]]
-
[[Category: Raj, G]]
+
[[Category: Raj G]]
-
[[Category: Shen, M]]
+
[[Category: Shen M]]
-
[[Category: Simeonov, A]]
+
[[Category: Simeonov A]]
-
[[Category: Thomas, C J]]
+
[[Category: Thomas CJ]]
-
[[Category: Thorne, N]]
+
[[Category: Thorne N]]
-
[[Category: Atp-binding]]
+
-
[[Category: Luminescence]]
+
-
[[Category: Magnesium]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Monooxygenase]]
+
-
[[Category: Nucleotide-binding]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Peroxisome]]
+
-
[[Category: Photoprotein]]
+

Current revision

Firefly luciferase apo structure (P41 form) with PEG 400 bound

PDB ID 3ier

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3ier"
Personal tools