This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4paf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:41, 28 December 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM RUEGERIA POMEROYI DSS-3 (SPO1773, TARGET EFI-510260) WITH BOUND 3,4-DIHYDROXYBENZOATE==
==CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM RUEGERIA POMEROYI DSS-3 (SPO1773, TARGET EFI-510260) WITH BOUND 3,4-DIHYDROXYBENZOATE==
-
<StructureSection load='4paf' size='340' side='right' caption='[[4paf]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
+
<StructureSection load='4paf' size='340' side='right'caption='[[4paf]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4paf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ruepo Ruepo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PAF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PAF FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4paf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruegeria_pomeroyi_DSS-3 Ruegeria pomeroyi DSS-3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PAF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4PAF FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DHB:3,4-DIHYDROXYBENZOIC+ACID'>DHB</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DHB:3,4-DIHYDROXYBENZOIC+ACID'>DHB</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4pai|4pai]], [[4pbh|4pbh]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4paf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4paf OCA], [https://pdbe.org/4paf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4paf RCSB], [https://www.ebi.ac.uk/pdbsum/4paf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4paf ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SPO1773 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=246200 RUEPO])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4paf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4paf OCA], [http://pdbe.org/4paf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4paf RCSB], [http://www.ebi.ac.uk/pdbsum/4paf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4paf ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DCTP_RUEPO DCTP_RUEPO] Solute-binding protein that binds 3,4-dihydroxybenzoate and 3-hydroxybenzoate (in vitro) (PubMed:25540822). Probably part of a tripartite ATP-independent periplasmic (TRAP) transport system that mediates solute transport into the cytoplasm.<ref>PMID:25540822</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 19:
</div>
</div>
<div class="pdbe-citations 4paf" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 4paf" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[TRAP dicarboxylate transporter%2C DctP subunit|TRAP dicarboxylate transporter%2C DctP subunit]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Ruepo]]
+
[[Category: Large Structures]]
-
[[Category: Almo, S C]]
+
[[Category: Ruegeria pomeroyi DSS-3]]
-
[[Category: Attonito, J D]]
+
[[Category: Al Obaidi NF]]
-
[[Category: Chowdhury, S]]
+
[[Category: Almo SC]]
-
[[Category: EFI, Enzyme Function Initiative]]
+
[[Category: Attonito JD]]
-
[[Category: Evans, B]]
+
[[Category: Chowdhury S]]
-
[[Category: Gerlt, J A]]
+
[[Category: Evans B]]
-
[[Category: Glenn, A Scott]]
+
[[Category: Gerlt JA]]
-
[[Category: Hillerich, B]]
+
[[Category: Hillerich B]]
-
[[Category: Love, J]]
+
[[Category: Love J]]
-
[[Category: Morisco, L L]]
+
[[Category: Morisco LL]]
-
[[Category: Obaidi, N F.Al]]
+
[[Category: Scott Glenn A]]
-
[[Category: Seidel, R D]]
+
[[Category: Seidel RD]]
-
[[Category: Stead, M]]
+
[[Category: Stead M]]
-
[[Category: Vetting, M W]]
+
[[Category: Vetting MW]]
-
[[Category: Wasserman, S R]]
+
[[Category: Wasserman SR]]
-
[[Category: Whalen, K L]]
+
[[Category: Whalen KL]]
-
[[Category: Efi]]
+
-
[[Category: Enzyme function initiative]]
+
-
[[Category: Solute-binding protein]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Trap periplasmic solute binding family]]
+

Current revision

CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM RUEGERIA POMEROYI DSS-3 (SPO1773, TARGET EFI-510260) WITH BOUND 3,4-DIHYDROXYBENZOATE

PDB ID 4paf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4paf"
Personal tools