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| ==Crystal structure of ribonuclease A tandem enzymes and their interaction with the cytosolic ribonuclease inhibitor== | | ==Crystal structure of ribonuclease A tandem enzymes and their interaction with the cytosolic ribonuclease inhibitor== |
- | <StructureSection load='3mx8' size='340' side='right' caption='[[3mx8]], [[Resolution|resolution]] 2.10Å' scene=''> | + | <StructureSection load='3mx8' size='340' side='right'caption='[[3mx8]], [[Resolution|resolution]] 2.10Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[3mx8]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MX8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3MX8 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3mx8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MX8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MX8 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1r3m|1r3m]], [[1bsr|1bsr]], [[1a2w|1a2w]], [[7rsa|7rsa]], [[1srn|1srn]], [[3mwq|3mwq]], [[3mwr|3mwr]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pancreatic_ribonuclease Pancreatic ribonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.5 3.1.27.5] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mx8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mx8 OCA], [https://pdbe.org/3mx8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mx8 RCSB], [https://www.ebi.ac.uk/pdbsum/3mx8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mx8 ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3mx8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mx8 OCA], [http://pdbe.org/3mx8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3mx8 RCSB], [http://www.ebi.ac.uk/pdbsum/3mx8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3mx8 ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/RNAS1_BOVIN RNAS1_BOVIN]] Endonuclease that catalyzes the cleavage of RNA on the 3' side of pyrimidine nucleotides. Acts on single stranded and double stranded RNA.<ref>PMID:7479688</ref> | + | [https://www.uniprot.org/uniprot/RNAS1_BOVIN RNAS1_BOVIN] Endonuclease that catalyzes the cleavage of RNA on the 3' side of pyrimidine nucleotides. Acts on single stranded and double stranded RNA.<ref>PMID:7479688</ref> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| ==See Also== | | ==See Also== |
- | *[[Temp|Temp]] | + | *[[Ribonuclease 3D structures|Ribonuclease 3D structures]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Pancreatic ribonuclease]] | + | [[Category: Bos taurus]] |
- | [[Category: Arnold, U]] | + | [[Category: Large Structures]] |
- | [[Category: Leich, F]] | + | [[Category: Arnold U]] |
- | [[Category: Lilie, H]] | + | [[Category: Leich F]] |
- | [[Category: Neumann, P]] | + | [[Category: Lilie H]] |
- | [[Category: Ulbrich-Hofmann, R]] | + | [[Category: Neumann P]] |
- | [[Category: Gppg-linker]]
| + | [[Category: Ulbrich-Hofmann R]] |
- | [[Category: Hydrolase]]
| + | |
- | [[Category: Ribonuclease a tandem enzyme]]
| + | |
| Structural highlights
Function
RNAS1_BOVIN Endonuclease that catalyzes the cleavage of RNA on the 3' side of pyrimidine nucleotides. Acts on single stranded and double stranded RNA.[1]
Publication Abstract from PubMed
Because of their ability to degrade RNA, RNases are potent cytotoxins. The cytotoxic activity of most members of the RNase A superfamily, however, is abolished by the cytosolic ribonuclease inhibitor (RI). RNase A tandem enzymes, in which two RNase A molecules are artificially connected by a peptide linker, and thus have a pseudodimeric structure, exhibit remarkable cytotoxic activity. In vitro, however, these enzymes are still inhibited by RI. Here, we present the crystal structures of three tandem enzymes with the linker sequences GPPG, SGSGSG, and SGRSGRSG, which allowed us to analyze the mode of binding of RI to the RNase A tandem enzymes. Modeling studies with the crystal structures of the RI-RNase A complex and the SGRSGRSG-RNase A tandem enzyme as templates suggested a 1 : 1 binding stoichiometry for the RI-RNase A tandem enzyme complex, with binding of the RI molecule to the N-terminal RNase A entity. These results were experimentally verified by analytical ultracentrifugation, quantitative electrophoresis, and proteolysis studies with trypsin. As other dimeric RNases, which are comparably cytotoxic, either evade RI binding or potentially even bind two RI molecules, inactivation by RI cannot be the crucial limitation to the cytotoxicity of dimeric RNases.
Crystal structure of RNase A tandem enzymes and their interaction with the cytosolic ribonuclease inhibitor.,Arnold U, Leich F, Neumann P, Lilie H, Ulbrich-Hofmann R FEBS J. 2011 Jan;278(2):331-40. doi: 10.1111/j.1742-4658.2010.07957.x., Epub 2010 Dec 6. PMID:21134128[2]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ delCardayre SB, Ribo M, Yokel EM, Quirk DJ, Rutter WJ, Raines RT. Engineering ribonuclease A: production, purification and characterization of wild-type enzyme and mutants at Gln11. Protein Eng. 1995 Mar;8(3):261-73. PMID:7479688
- ↑ Arnold U, Leich F, Neumann P, Lilie H, Ulbrich-Hofmann R. Crystal structure of RNase A tandem enzymes and their interaction with the cytosolic ribonuclease inhibitor. FEBS J. 2011 Jan;278(2):331-40. doi: 10.1111/j.1742-4658.2010.07957.x., Epub 2010 Dec 6. PMID:21134128 doi:10.1111/j.1742-4658.2010.07957.x
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