This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


210d

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:07, 14 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:210d.gif|left|200px]]
 
-
{{Structure
+
==CRYSTAL AND MOLECULAR STRUCTURE OF A NEW Z-DNA CRYSTAL FORM: D[CGT(2-NH2-A)CG] AND ITS PLATINATED DERIVATIVE==
-
|PDB= 210d |SIZE=350|CAPTION= <scene name='initialview01'>210d</scene>, resolution 1.350&Aring;
+
<StructureSection load='210d' size='340' side='right'caption='[[210d]], [[Resolution|resolution]] 1.35&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=1AP:2,6-DIAMINOPURINE+NUCLEOTIDE'>1AP</scene>, <scene name='pdbligand=DC:2&#39;-DEOXYCYTIDINE-5&#39;-MONOPHOSPHATE'>DC</scene>, <scene name='pdbligand=DG:2&#39;-DEOXYGUANOSINE-5&#39;-MONOPHOSPHATE'>DG</scene>, <scene name='pdbligand=DT:THYMIDINE-5&#39;-MONOPHOSPHATE'>DT</scene>, <scene name='pdbligand=SPM:SPERMINE'>SPM</scene>
+
<table><tr><td colspan='2'>[[210d]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=210D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=210D FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.35&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1AP:2,6-DIAMINOPURINE+NUCLEOTIDE'>1AP</scene>, <scene name='pdbligand=SPM:SPERMINE'>SPM</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=210d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=210d OCA], [https://pdbe.org/210d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=210d RCSB], [https://www.ebi.ac.uk/pdbsum/210d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=210d ProSAT]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=210d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=210d OCA], [http://www.ebi.ac.uk/pdbsum/210d PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=210d RCSB]</span>
+
__TOC__
-
}}
+
</StructureSection>
-
 
+
[[Category: Large Structures]]
-
'''CRYSTAL AND MOLECULAR STRUCTURE OF A NEW Z-DNA CRYSTAL FORM: D[CGT(2-NH2-A)CG] AND ITS PLATINATED DERIVATIVE'''
+
[[Category: Arvantis GM]]
-
 
+
[[Category: Berman HM]]
-
 
+
[[Category: Gaffney B]]
-
==Overview==
+
[[Category: Ginell SL]]
-
The three-dimensional structure of d[CGTA'CG], where A' = [2-NH2-A], was determined to atomic (1.35 A) resolution by single isomorphous replacement. The d[CGTA'CG] hexamer crystallizes in space group P3221, and is not isomorphous with other DNA hexanucleotides. Despite completely different crystal packing, the essential characteristics of the Z-DNA conformation are maintained. The structure was determined by single isomorphous replacement using a triammine platinum fragment. Thus, this study also demonstrates, for the first time, the feasibility of the use of this reagent for the direct phasing of DNA crystal structures.
+
[[Category: Jones R]]
-
 
+
[[Category: Lessinger L]]
-
==About this Structure==
+
[[Category: Parkinson GN]]
-
210D is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=210D OCA].
+
-
 
+
-
==Reference==
+
-
Crystal and molecular structure of a new Z-DNA crystal form: d[CGT(2-NH2-A)CG] and its platinated derivative., Parkinson GN, Arvanitis GM, Lessinger L, Ginell SL, Jones R, Gaffney B, Berman HM, Biochemistry. 1995 Nov 28;34(47):15487-95. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/7492550 7492550]
+
-
[[Category: Protein complex]]
+
-
[[Category: Arvantis, G M.]]
+
-
[[Category: Berman, H M.]]
+
-
[[Category: Gaffney, B.]]
+
-
[[Category: Ginell, S L.]]
+
-
[[Category: Jones, R.]]
+
-
[[Category: Lessinger, L.]]
+
-
[[Category: Parkinson, G N.]]
+
-
[[Category: double helix]]
+
-
[[Category: modified]]
+
-
[[Category: z-dna]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:44:11 2008''
+

Current revision

CRYSTAL AND MOLECULAR STRUCTURE OF A NEW Z-DNA CRYSTAL FORM: D[CGT(2-NH2-A)CG] AND ITS PLATINATED DERIVATIVE

PDB ID 210d

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/210d"
Personal tools