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5tis
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==Room temperature XFEL structure of the native, doubly-illuminated photosystem II complex== | ==Room temperature XFEL structure of the native, doubly-illuminated photosystem II complex== | ||
| - | <StructureSection load='5tis' size='340' side='right' caption='[[5tis]], [[Resolution|resolution]] 2.25Å' scene=''> | + | <StructureSection load='5tis' size='340' side='right'caption='[[5tis]], [[Resolution|resolution]] 2.25Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5tis]] is a | + | <table><tr><td colspan='2'>[[5tis]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermosynechococcus_vestitus_BP-1 Thermosynechococcus vestitus BP-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TIS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5TIS FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=DGD:DIGALACTOSYL+DIACYL+GLYCEROL+(DGDG)'>DGD</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LMG:1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE'>LMG</scene>, <scene name='pdbligand=OEX:CA-MN4-O5+CLUSTER'>OEX</scene>, <scene name='pdbligand=PHO:PHEOPHYTIN+A'>PHO</scene>, <scene name='pdbligand=PL9:2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE'>PL9</scene>, <scene name='pdbligand=SQD:1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL'>SQD</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2500038Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=DGD:DIGALACTOSYL+DIACYL+GLYCEROL+(DGDG)'>DGD</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FME:N-FORMYLMETHIONINE'>FME</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LMG:1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE'>LMG</scene>, <scene name='pdbligand=OEX:CA-MN4-O5+CLUSTER'>OEX</scene>, <scene name='pdbligand=PHO:PHEOPHYTIN+A'>PHO</scene>, <scene name='pdbligand=PL9:2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE'>PL9</scene>, <scene name='pdbligand=SQD:1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL'>SQD</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5tis FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tis OCA], [https://pdbe.org/5tis PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5tis RCSB], [https://www.ebi.ac.uk/pdbsum/5tis PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5tis ProSAT]</span></td></tr> | |
| - | + | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/PSBA1_THEVB PSBA1_THEVB] Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors.[HAMAP-Rule:MF_01379]<ref>PMID:20558739</ref> <ref>PMID:21367867</ref> <ref>PMID:25006873</ref> |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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</div> | </div> | ||
<div class="pdbe-citations 5tis" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 5tis" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Cytochrome C 3D structures|Cytochrome C 3D structures]] | ||
| + | *[[Photosystem II 3D structures|Photosystem II 3D structures]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Thermosynechococcus | + | [[Category: Thermosynechococcus vestitus BP-1]] |
| - | [[Category: Adams | + | [[Category: Adams PD]] |
| - | [[Category: Afonine | + | [[Category: Afonine PV]] |
| - | [[Category: Aller | + | [[Category: Aller P]] |
| - | [[Category: Alonso-Mori | + | [[Category: Alonso-Mori R]] |
| - | [[Category: Andi | + | [[Category: Andi B]] |
| - | [[Category: Aquila | + | [[Category: Aquila A]] |
| - | [[Category: Bean | + | [[Category: Bean MA]] |
| - | [[Category: Bergmann | + | [[Category: Bergmann U]] |
| - | [[Category: Boutet | + | [[Category: Boutet S]] |
| - | [[Category: Braeuer | + | [[Category: Braeuer P]] |
| - | [[Category: Brewster | + | [[Category: Brewster AS]] |
| - | [[Category: Brunger | + | [[Category: Brunger AT]] |
| - | [[Category: Chatterjee | + | [[Category: Chatterjee R]] |
| - | [[Category: Cheah | + | [[Category: Cheah MH]] |
| - | [[Category: Dobbek | + | [[Category: Dobbek H]] |
| - | [[Category: Docker | + | [[Category: Docker PT]] |
| - | [[Category: Douthit | + | [[Category: Douthit L]] |
| - | [[Category: Evans | + | [[Category: Evans G]] |
| - | [[Category: Fransson | + | [[Category: Fransson T]] |
| - | [[Category: Fuller | + | [[Category: Fuller F]] |
| - | [[Category: Glownia | + | [[Category: Glownia JM]] |
| - | [[Category: Gul | + | [[Category: Gul S]] |
| - | [[Category: Hunter | + | [[Category: Hunter MS]] |
| - | [[Category: Hussein | + | [[Category: Hussein R]] |
| - | [[Category: Ibrahim | + | [[Category: Ibrahim M]] |
| - | [[Category: Kern | + | [[Category: Kern J]] |
| - | [[Category: Koglin | + | [[Category: Koglin JE]] |
| - | [[Category: Koroidov | + | [[Category: Koroidov S]] |
| - | [[Category: Kroll | + | [[Category: Kroll T]] |
| - | [[Category: Kubin | + | [[Category: Kubin M]] |
| - | [[Category: Laksmono | + | [[Category: Laksmono H]] |
| - | [[Category: Lassalle | + | [[Category: Lassalle L]] |
| - | [[Category: Liang | + | [[Category: Liang M]] |
| - | + | [[Category: Liebschner D]] | |
| - | [[Category: Liebschner | + | [[Category: Lyubimov AY]] |
| - | [[Category: Lyubimov | + | [[Category: Messinger J]] |
| - | [[Category: Messinger | + | [[Category: Michels-Clark T]] |
| - | [[Category: Michels-Clark | + | [[Category: Moriarty NW]] |
| - | [[Category: Moriarty | + | [[Category: Nelson S]] |
| - | [[Category: Nelson | + | [[Category: Nilsson H]] |
| - | [[Category: Nilsson | + | [[Category: Orville AM]] |
| - | [[Category: Orville | + | [[Category: Pastor E]] |
| - | [[Category: Pastor | + | [[Category: Pham LV]] |
| - | [[Category: Pham | + | [[Category: Robinson J]] |
| - | [[Category: Robinson | + | [[Category: Saracini C]] |
| - | [[Category: Saracini | + | [[Category: Sauter NK]] |
| - | [[Category: Sauter | + | [[Category: Seuffert I]] |
| - | [[Category: Seuffert | + | [[Category: Shevela D]] |
| - | [[Category: Shevela | + | [[Category: Sierra RG]] |
| - | [[Category: Sierra | + | [[Category: Sikorski M]] |
| - | [[Category: Sikorski | + | [[Category: Sokaras D]] |
| - | [[Category: Sokaras | + | [[Category: Stan CA]] |
| - | [[Category: Stan | + | [[Category: Tran R]] |
| - | [[Category: Tran | + | [[Category: Uervirojnangkoorn M]] |
| - | [[Category: Uervirojnangkoorn | + | [[Category: Watermann DG]] |
| - | [[Category: Watermann | + | [[Category: Weis WI]] |
| - | [[Category: Weis | + | [[Category: Weng T-C]] |
| - | [[Category: Weng | + | [[Category: Weninger C]] |
| - | [[Category: Weninger | + | [[Category: Wernet P]] |
| - | [[Category: Wernet | + | [[Category: Yachandra VK]] |
| - | [[Category: Yachandra | + | [[Category: Yano J]] |
| - | [[Category: Yano | + | [[Category: Young ID]] |
| - | [[Category: Young | + | [[Category: Zhang M]] |
| - | [[Category: Zhang | + | [[Category: Zhu D]] |
| - | [[Category: Zhu | + | [[Category: Zouni A]] |
| - | [[Category: Zouni | + | [[Category: Zwart PH]] |
| - | [[Category: Zwart | + | [[Category: De Lichtenberg C]] |
| - | [[Category: | + | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Room temperature XFEL structure of the native, doubly-illuminated photosystem II complex
| |||||||||||
Categories: Large Structures | Thermosynechococcus vestitus BP-1 | Adams PD | Afonine PV | Aller P | Alonso-Mori R | Andi B | Aquila A | Bean MA | Bergmann U | Boutet S | Braeuer P | Brewster AS | Brunger AT | Chatterjee R | Cheah MH | Dobbek H | Docker PT | Douthit L | Evans G | Fransson T | Fuller F | Glownia JM | Gul S | Hunter MS | Hussein R | Ibrahim M | Kern J | Koglin JE | Koroidov S | Kroll T | Kubin M | Laksmono H | Lassalle L | Liang M | Liebschner D | Lyubimov AY | Messinger J | Michels-Clark T | Moriarty NW | Nelson S | Nilsson H | Orville AM | Pastor E | Pham LV | Robinson J | Saracini C | Sauter NK | Seuffert I | Shevela D | Sierra RG | Sikorski M | Sokaras D | Stan CA | Tran R | Uervirojnangkoorn M | Watermann DG | Weis WI | Weng T-C | Weninger C | Wernet P | Yachandra VK | Yano J | Young ID | Zhang M | Zhu D | Zouni A | Zwart PH | De Lichtenberg C
