This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2a21

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:10, 14 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2a21.gif|left|200px]]
 
-
{{Structure
+
==Aquifex aeolicus KDO8PS in complex with PEP, PO4, and Zn2+==
-
|PDB= 2a21 |SIZE=350|CAPTION= <scene name='initialview01'>2a21</scene>, resolution 1.80&Aring;
+
<StructureSection load='2a21' size='340' side='right'caption='[[2a21]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=PEP:PHOSPHOENOLPYRUVATE'>PEP</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
+
<table><tr><td colspan='2'>[[2a21]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A21 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2A21 FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/3-deoxy-8-phosphooctulonate_synthase 3-deoxy-8-phosphooctulonate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.55 2.5.1.55] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
|GENE= kdsA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 Aquifex aeolicus])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PEP:PHOSPHOENOLPYRUVATE'>PEP</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2a21 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a21 OCA], [https://pdbe.org/2a21 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2a21 RCSB], [https://www.ebi.ac.uk/pdbsum/2a21 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2a21 ProSAT]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a21 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a21 OCA], [http://www.ebi.ac.uk/pdbsum/2a21 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2a21 RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/KDSA_AQUAE KDSA_AQUAE]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a2/2a21_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2a21 ConSurf].
 +
<div style="clear:both"></div>
-
'''Aquifex aeolicus KDO8PS in complex with PEP, PO4, and Zn2+'''
+
==See Also==
-
 
+
*[[Kdo-8-phosphate synthase|Kdo-8-phosphate synthase]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2A21 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A21 OCA].
+
-
[[Category: 3-deoxy-8-phosphooctulonate synthase]]
+
[[Category: Aquifex aeolicus]]
[[Category: Aquifex aeolicus]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Gatti, D L.]]
+
[[Category: Gatti DL]]
-
[[Category: Kona, F.]]
+
[[Category: Kona F]]
-
[[Category: Lu, J.]]
+
[[Category: Lu J]]
-
[[Category: Martin, P.]]
+
[[Category: Martin P]]
-
[[Category: Xu, X.]]
+
[[Category: Xu X]]
-
[[Category: transferase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:46:43 2008''
+

Current revision

Aquifex aeolicus KDO8PS in complex with PEP, PO4, and Zn2+

PDB ID 2a21

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2a21"
Personal tools