This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3oqe

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:56, 1 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Structure of OpdA mutant Y257F==
==Structure of OpdA mutant Y257F==
-
<StructureSection load='3oqe' size='340' side='right' caption='[[3oqe]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='3oqe' size='340' side='right'caption='[[3oqe]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3oqe]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"achromobacter_radiobacter"_(beijerinck_and_van_delden_1902)_bergey_et_al._1934 "achromobacter radiobacter" (beijerinck and van delden 1902) bergey et al. 1934]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OQE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OQE FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3oqe]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OQE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OQE FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3ood|3ood]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3oqe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oqe OCA], [https://pdbe.org/3oqe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3oqe RCSB], [https://www.ebi.ac.uk/pdbsum/3oqe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3oqe ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">opdA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=358 "Achromobacter radiobacter" (Beijerinck and van Delden 1902) Bergey et al. 1934])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aryldialkylphosphatase Aryldialkylphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.8.1 3.1.8.1] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3oqe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oqe OCA], [http://pdbe.org/3oqe PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3oqe RCSB], [http://www.ebi.ac.uk/pdbsum/3oqe PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3oqe ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q93LD7_RHIRD Q93LD7_RHIRD]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 20: Line 19:
</div>
</div>
<div class="pdbe-citations 3oqe" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 3oqe" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Phosphotriesterase 3D structures|Phosphotriesterase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Aryldialkylphosphatase]]
+
[[Category: Agrobacterium tumefaciens]]
-
[[Category: Ely, F]]
+
[[Category: Large Structures]]
-
[[Category: Guddat, L W]]
+
[[Category: Ely F]]
-
[[Category: Ollis, D L]]
+
[[Category: Guddat LW]]
-
[[Category: Schenk, G]]
+
[[Category: Ollis DL]]
-
[[Category: Divalent metal ion]]
+
[[Category: Schenk G]]
-
[[Category: Hydrolase]]
+
-
[[Category: Organophosphate]]
+
-
[[Category: Phosphotriesterase]]
+
-
[[Category: Tim barrel]]
+

Current revision

Structure of OpdA mutant Y257F

PDB ID 3oqe

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3oqe"
Personal tools