This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3utn

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:14, 8 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of Tum1 protein from Saccharomyces cerevisiae==
==Crystal structure of Tum1 protein from Saccharomyces cerevisiae==
-
<StructureSection load='3utn' size='340' side='right' caption='[[3utn]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='3utn' size='340' side='right'caption='[[3utn]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3utn]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Baker's_yeast Baker's yeast]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UTN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3UTN FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3utn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UTN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3UTN FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TUM1, YOR251C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Baker's yeast])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Thiosulfate_sulfurtransferase Thiosulfate sulfurtransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.8.1.1 2.8.1.1] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3utn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3utn OCA], [https://pdbe.org/3utn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3utn RCSB], [https://www.ebi.ac.uk/pdbsum/3utn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3utn ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3utn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3utn OCA], [http://pdbe.org/3utn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3utn RCSB], [http://www.ebi.ac.uk/pdbsum/3utn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3utn ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/THTR_YEAST THTR_YEAST]] Required for formation of the 2-thio group of the 5-methoxycarbonylmethyl-2-thiouridine modified base in some tRNAs.<ref>PMID:18755837</ref>
+
[https://www.uniprot.org/uniprot/THTR_YEAST THTR_YEAST] Required for formation of the 2-thio group of the 5-methoxycarbonylmethyl-2-thiouridine modified base in some tRNAs.<ref>PMID:18755837</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 20: Line 19:
</div>
</div>
<div class="pdbe-citations 3utn" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 3utn" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Sulfurtransferase|Sulfurtransferase]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Baker's yeast]]
+
[[Category: Large Structures]]
-
[[Category: Thiosulfate sulfurtransferase]]
+
[[Category: Saccharomyces cerevisiae S288C]]
-
[[Category: Gong, W]]
+
[[Category: Gong W]]
-
[[Category: Ji, C]]
+
[[Category: Ji C]]
-
[[Category: Liu, M]]
+
[[Category: Liu M]]
-
[[Category: Qiu, R]]
+
[[Category: Qiu R]]
-
[[Category: Wang, F]]
+
[[Category: Wang F]]
-
[[Category: Rhodanese-like domain]]
+
-
[[Category: Sulfurtransferase]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of Tum1 protein from Saccharomyces cerevisiae

PDB ID 3utn

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools