This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5wlg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:16, 4 October 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal Structure of H-2Db with the GAP501 peptide (SQL)==
==Crystal Structure of H-2Db with the GAP501 peptide (SQL)==
-
<StructureSection load='5wlg' size='340' side='right' caption='[[5wlg]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+
<StructureSection load='5wlg' size='340' side='right'caption='[[5wlg]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5wlg]] is a 10 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WLG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5WLG FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5wlg]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens], [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus] and [https://en.wikipedia.org/wiki/Plasmodium_berghei Plasmodium berghei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WLG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5WLG FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5wlg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wlg OCA], [http://pdbe.org/5wlg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5wlg RCSB], [http://www.ebi.ac.uk/pdbsum/5wlg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5wlg ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5wlg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wlg OCA], [https://pdbe.org/5wlg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5wlg RCSB], [https://www.ebi.ac.uk/pdbsum/5wlg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5wlg ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/HA11_MOUSE HA11_MOUSE]] Involved in the presentation of foreign antigens to the immune system. [[http://www.uniprot.org/uniprot/B2MG_MOUSE B2MG_MOUSE]] Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.
+
[https://www.uniprot.org/uniprot/A0A0Y9W4B5_PLABE A0A0Y9W4B5_PLABE]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Immune response (Ir) genes, originally proposed by Baruj Benacerraf to explain differential antigen-specific responses in animal models, have become synonymous with the major histocompatibility complex (MHC). We discovered a non-MHC-linked Ir gene in a T cell receptor (TCR) locus that was required for CD8(+) T cell responses to the Plasmodium berghei GAP5040-48 epitope in mice expressing the MHC class I allele H-2D(b). GAP5040-48-specific CD8(+) T cell responses emerged from a very large pool of naive Vbeta8.1(+) precursors, which dictated susceptibility to cerebral malaria and conferred protection against recombinant Listeria monocytogenes infection. Structural analysis of a prototypical Vbeta8.1(+) TCR-H-2D(b)-GAP5040-48 ternary complex revealed that germline-encoded complementarity-determining region 1beta residues present exclusively in the Vbeta8.1 segment mediated essential interactions with the GAP5040-48 peptide. Collectively, these findings demonstrated that Vbeta8.1 functioned as an Ir gene that was indispensable for immune reactivity against the malaria GAP5040-48 epitope.
 +
 
 +
A T Cell Receptor Locus Harbors a Malaria-Specific Immune Response Gene.,Van Braeckel-Budimir N, Gras S, Ladell K, Josephs TM, Pewe L, Urban SL, Miners KL, Farenc C, Price DA, Rossjohn J, Harty JT Immunity. 2017 Nov 21;47(5):835-847.e4. doi: 10.1016/j.immuni.2017.10.013. Epub, 2017 Nov 14. PMID:29150238<ref>PMID:29150238</ref>
 +
 
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 5wlg" style="background-color:#fffaf0;"></div>
 +
 
 +
==See Also==
 +
*[[Beta-2 microglobulin 3D structures|Beta-2 microglobulin 3D structures]]
 +
*[[T-cell receptor 3D structures|T-cell receptor 3D structures]]
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Farenc, C]]
+
[[Category: Homo sapiens]]
-
[[Category: Gras, S]]
+
[[Category: Large Structures]]
-
[[Category: Josephs, T]]
+
[[Category: Mus musculus]]
-
[[Category: Rossjohn, J]]
+
[[Category: Plasmodium berghei]]
-
[[Category: Gap50]]
+
[[Category: Farenc C]]
-
[[Category: H-2db]]
+
[[Category: Gras S]]
-
[[Category: Immune response gene]]
+
[[Category: Josephs T]]
-
[[Category: Immune system]]
+
[[Category: Rossjohn J]]
-
[[Category: Malaria]]
+
-
[[Category: T cell]]
+
-
[[Category: Tcr]]
+
-
[[Category: Vb8 1]]
+

Current revision

Crystal Structure of H-2Db with the GAP501 peptide (SQL)

PDB ID 5wlg

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools