|
|
| (One intermediate revision not shown.) |
| Line 1: |
Line 1: |
| | | | |
| | ==Crystal structure of Amycolatopsis orientalis BexX complexed with G6P== | | ==Crystal structure of Amycolatopsis orientalis BexX complexed with G6P== |
| - | <StructureSection load='4n6f' size='340' side='right' caption='[[4n6f]], [[Resolution|resolution]] 2.25Å' scene=''> | + | <StructureSection load='4n6f' size='340' side='right'caption='[[4n6f]], [[Resolution|resolution]] 2.25Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4n6f]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"amycolatopsis_orientalis_subsp._vinearia"_okabe_et_al._1990 "amycolatopsis orientalis subsp. vinearia" okabe et al. 1990]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4N6F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4N6F FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4n6f]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Amycolatopsis_orientalis_subsp._vinearia Amycolatopsis orientalis subsp. vinearia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4N6F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4N6F FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=F6R:FRUCTOSE+-6-PHOSPHATE'>F6R</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4n6e|4n6e]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=F6R:FRUCTOSE+-6-PHOSPHATE'>F6R</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">bexX ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=797057 "Amycolatopsis orientalis subsp. vinearia" Okabe et al. 1990])</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4n6f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4n6f OCA], [https://pdbe.org/4n6f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4n6f RCSB], [https://www.ebi.ac.uk/pdbsum/4n6f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4n6f ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4n6f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4n6f OCA], [http://pdbe.org/4n6f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4n6f RCSB], [http://www.ebi.ac.uk/pdbsum/4n6f PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4n6f ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/D7RFL7_AMYOR D7RFL7_AMYOR] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
| Line 22: |
Line 23: |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Amycolatopsis orientalis subsp. vinearia okabe et al. 1990]] | + | [[Category: Amycolatopsis orientalis subsp. vinearia]] |
| - | [[Category: Chen, Y]] | + | [[Category: Large Structures]] |
| - | [[Category: Ealick, S E]] | + | [[Category: Chen Y]] |
| - | [[Category: Kinsland, C]] | + | [[Category: Ealick SE]] |
| - | [[Category: Li, J]] | + | [[Category: Kinsland C]] |
| - | [[Category: Liu, H]] | + | [[Category: Li J]] |
| - | [[Category: Liu, T]] | + | [[Category: Liu H]] |
| - | [[Category: Lu, M J]] | + | [[Category: Liu T]] |
| - | [[Category: Ou, A]] | + | [[Category: Lu MJ]] |
| - | [[Category: Sasaki, E]] | + | [[Category: Ou A]] |
| - | [[Category: Sun, H G]] | + | [[Category: Sasaki E]] |
| - | [[Category: Zhang, X]] | + | [[Category: Sun HG]] |
| - | [[Category: Zhang, Y]] | + | [[Category: Zhang X]] |
| - | [[Category: Bexx]]
| + | [[Category: Zhang Y]] |
| - | [[Category: Lyase]]
| + | |
| - | [[Category: Thiosugar synthase]]
| + | |
| - | [[Category: Tim barrel]]
| + | |
| Structural highlights
Function
D7RFL7_AMYOR
Publication Abstract from PubMed
Sulphur is an essential element for life and is ubiquitous in living systems. Yet how the sulphur atom is incorporated into many sulphur-containing secondary metabolites is poorly understood. For bond formation between carbon and sulphur in primary metabolites, the major ionic sulphur sources are the persulphide and thiocarboxylate groups on sulphur-carrier (donor) proteins. Each group is post-translationally generated through the action of a specific activating enzyme. In all reported bacterial cases, the gene encoding the enzyme that catalyses the carbon-sulphur bond formation reaction and that encoding the cognate sulphur-carrier protein exist in the same gene cluster. To study the production of the 2-thiosugar moiety in BE-7585A, an antibiotic from Amycolatopsis orientalis, we identified a putative 2-thioglucose synthase, BexX, whose protein sequence and mode of action seem similar to those of ThiG, the enzyme that catalyses thiazole formation in thiamine biosynthesis. However, no gene encoding a sulphur-carrier protein could be located in the BE-7585A cluster. Subsequent genome sequencing uncovered a few genes encoding sulphur-carrier proteins that are probably involved in the biosynthesis of primary metabolites but only one activating enzyme gene in the A. orientalis genome. Further experiments showed that this activating enzyme can adenylate each of these sulphur-carrier proteins and probably also catalyses the subsequent thiolation, through its rhodanese domain. A proper combination of these sulphur-delivery systems is effective for BexX-catalysed 2-thioglucose production. The ability of BexX to selectively distinguish sulphur-carrier proteins is given a structural basis using X-ray crystallography. This study is, to our knowledge, the first complete characterization of thiosugar formation in nature and also demonstrates the receptor promiscuity of the A. orientalis sulphur-delivery system. Our results also show that co-opting the sulphur-delivery machinery of primary metabolism for the biosynthesis of sulphur-containing natural products is probably a general strategy found in nature.
Co-opting sulphur-carrier proteins from primary metabolic pathways for 2-thiosugar biosynthesis.,Sasaki E, Zhang X, Sun HG, Lu MY, Liu TL, Ou A, Li JY, Chen YH, Ealick SE, Liu HW Nature. 2014 Jun 19;509(7505):427-31. doi: 10.1038/nature13256. Epub 2014 May 11. PMID:24814342[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Sasaki E, Zhang X, Sun HG, Lu MY, Liu TL, Ou A, Li JY, Chen YH, Ealick SE, Liu HW. Co-opting sulphur-carrier proteins from primary metabolic pathways for 2-thiosugar biosynthesis. Nature. 2014 Jun 19;509(7505):427-31. doi: 10.1038/nature13256. Epub 2014 May 11. PMID:24814342 doi:http://dx.doi.org/10.1038/nature13256
|