4nf6

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==Crystal structure of GluN1/GluN2A ligand-binding domain in complex with glycine and PPDA==
==Crystal structure of GluN1/GluN2A ligand-binding domain in complex with glycine and PPDA==
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<StructureSection load='4nf6' size='340' side='right' caption='[[4nf6]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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<StructureSection load='4nf6' size='340' side='right'caption='[[4nf6]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4nf6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Buffalo_rat Buffalo rat]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NF6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4NF6 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4nf6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NF6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4NF6 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=2JL:(2S,3R)-1-(PHENANTHREN-2-YLCARBONYL)PIPERAZINE-2,3-DICARBOXYLIC+ACID'>2JL</scene>, <scene name='pdbligand=GLY:GLYCINE'>GLY</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4nf4|4nf4]], [[4nf5|4nf5]], [[4nf8|4nf8]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2JL:(2S,3R)-1-(PHENANTHREN-2-YLCARBONYL)PIPERAZINE-2,3-DICARBOXYLIC+ACID'>2JL</scene>, <scene name='pdbligand=GLY:GLYCINE'>GLY</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Grin1, Nmdar1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Buffalo rat]), Grin2a ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Buffalo rat])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4nf6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nf6 OCA], [https://pdbe.org/4nf6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4nf6 RCSB], [https://www.ebi.ac.uk/pdbsum/4nf6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4nf6 ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4nf6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nf6 OCA], [http://pdbe.org/4nf6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4nf6 RCSB], [http://www.ebi.ac.uk/pdbsum/4nf6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4nf6 ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/NMDZ1_RAT NMDZ1_RAT]] NMDA receptor subtype of glutamate-gated ion channels possesses high calcium permeability and voltage-dependent sensitivity to magnesium. Mediated by glycine. Plays a key role in synaptic plasticity, synaptogenesis, excitotoxicity, memory acquisition and learning. It mediates neuronal functions in glutamate neurotransmission. Is involved in the cell surface targeting of NMDA receptors.<ref>PMID:15996549</ref> [[http://www.uniprot.org/uniprot/NMDE1_RAT NMDE1_RAT]] NMDA receptor subtype of glutamate-gated ion channels possesses high calcium permeability and voltage-dependent sensitivity to magnesium. Activation requires binding of agonist to both types of subunits.
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[https://www.uniprot.org/uniprot/NMDZ1_RAT NMDZ1_RAT] NMDA receptor subtype of glutamate-gated ion channels possesses high calcium permeability and voltage-dependent sensitivity to magnesium. Mediated by glycine. Plays a key role in synaptic plasticity, synaptogenesis, excitotoxicity, memory acquisition and learning. It mediates neuronal functions in glutamate neurotransmission. Is involved in the cell surface targeting of NMDA receptors.<ref>PMID:15996549</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
</div>
<div class="pdbe-citations 4nf6" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 4nf6" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Glutamate receptor 3D structures|Glutamate receptor 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Buffalo rat]]
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[[Category: Large Structures]]
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[[Category: Furukawa, H]]
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[[Category: Rattus norvegicus]]
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[[Category: Jespersen, A]]
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[[Category: Furukawa H]]
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[[Category: Tajima, N]]
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[[Category: Jespersen A]]
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[[Category: Glycine and ppda]]
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[[Category: Tajima N]]
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[[Category: Receptor]]
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[[Category: Transport protein]]
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Current revision

Crystal structure of GluN1/GluN2A ligand-binding domain in complex with glycine and PPDA

PDB ID 4nf6

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