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| | ==Sperm whale myoglobin mutant L29H F33Y F43H (F33Y CuBMb) with oxygen bound== | | ==Sperm whale myoglobin mutant L29H F33Y F43H (F33Y CuBMb) with oxygen bound== |
| - | <StructureSection load='5hav' size='340' side='right' caption='[[5hav]], [[Resolution|resolution]] 1.27Å' scene=''> | + | <StructureSection load='5hav' size='340' side='right'caption='[[5hav]], [[Resolution|resolution]] 1.27Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5hav]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Phycd Phycd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HAV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HAV FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5hav]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HAV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5HAV FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.268Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4fwx|4fwx]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9755 PHYCD])</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5hav FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hav OCA], [https://pdbe.org/5hav PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5hav RCSB], [https://www.ebi.ac.uk/pdbsum/5hav PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5hav ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hav FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hav OCA], [http://pdbe.org/5hav PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hav RCSB], [http://www.ebi.ac.uk/pdbsum/5hav PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5hav ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/MYG_PHYCD MYG_PHYCD]] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles. | + | [https://www.uniprot.org/uniprot/MYG_PHYMC MYG_PHYMC] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles. |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | </div> | | </div> |
| | <div class="pdbe-citations 5hav" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 5hav" style="background-color:#fffaf0;"></div> |
| | + | |
| | + | ==See Also== |
| | + | *[[Myoglobin 3D structures|Myoglobin 3D structures]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Phycd]] | + | [[Category: Large Structures]] |
| - | [[Category: Lu, Y]] | + | [[Category: Physeter catodon]] |
| - | [[Category: Petrik, I D]] | + | [[Category: Lu Y]] |
| - | [[Category: Oxidase]] | + | [[Category: Petrik ID]] |
| - | [[Category: Oxidoreductase]]
| + | |
| Structural highlights
Function
MYG_PHYMC Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
Publication Abstract from PubMed
Heme-copper oxidases (HCOs) catalyze efficient reduction of O2 to water in biological respiration. Despite progress made in studying native enzymes and their models, the roles played by non-covalent interactions in promoting this activity are still not well understood. Herein, we report EPR spectroscopic studies of cryoreduced oxy-F33Y-CuBMb, a functional model of HCOs engineered in myoglobin (Mb). We find that the cryoreduction at 77K of the O2-bound form, trapped in the conformation of the parent oxyferrous form displays a ferric-hydroperoxo EPR signal, in contrast to the cryoreduced oxy-wild type Mb (WTMb), which is unable to deliver a proton and shows a signal from the peroxo-ferric state. Crystallography of oxy-F33Y-CuBMb reveals an extensive hydrogen-bonding network involving water molecules, which is absent from oxy-WTMb. This H-bonding, proton-delivery network is the key structural feature that has transformed the reversible oxygen-binding protein, WTMb, into F33Y-CuBMb, an oxygen-activating enzyme that reduces oxygen to water. These results provide direct evidence of the importance of H-bonding networks involving water in conferring enzymatic activity to a designed metalloenzyme. Incorporating such extended H-bonding networks in the design of other metalloenzymes may allow conferring and fine-tuning their enzymatic activities.
Spectroscopic and crystallographic evidence for the role of a water-containing hydrogen bonding network in oxidase activity of an engineered myoglobin.,Petrik ID, Davydov R, Ross M, Zhao X, Hoffman B, Lu Y J Am Chem Soc. 2015 Dec 30. PMID:26716352[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Petrik ID, Davydov R, Ross M, Zhao X, Hoffman B, Lu Y. Spectroscopic and crystallographic evidence for the role of a water-containing hydrogen bonding network in oxidase activity of an engineered myoglobin. J Am Chem Soc. 2015 Dec 30. PMID:26716352 doi:http://dx.doi.org/10.1021/jacs.5b12004
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