5ioq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:03, 30 August 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Flavin-dependent thymidylate synthase in complex with FAD and deoxyuridine==
==Flavin-dependent thymidylate synthase in complex with FAD and deoxyuridine==
-
<StructureSection load='5ioq' size='340' side='right' caption='[[5ioq]], [[Resolution|resolution]] 1.93&Aring;' scene=''>
+
<StructureSection load='5ioq' size='340' side='right'caption='[[5ioq]], [[Resolution|resolution]] 1.93&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5ioq]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thema Thema]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IOQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5IOQ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5ioq]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima_MSB8 Thermotoga maritima MSB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IOQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5IOQ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DUR:2-DEOXYURIDINE'>DUR</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.93&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5ior|5ior]], [[5ios|5ios]], [[5iot|5iot]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DUR:2-DEOXYURIDINE'>DUR</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">thyX, thy1, TM_0449 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243274 THEMA])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ioq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ioq OCA], [https://pdbe.org/5ioq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ioq RCSB], [https://www.ebi.ac.uk/pdbsum/5ioq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ioq ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Thymidylate_synthase_(FAD) Thymidylate synthase (FAD)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.148 2.1.1.148] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ioq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ioq OCA], [http://pdbe.org/5ioq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ioq RCSB], [http://www.ebi.ac.uk/pdbsum/5ioq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ioq ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/THYX_THEMA THYX_THEMA]] Catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate.
+
[https://www.uniprot.org/uniprot/THYX_THEMA THYX_THEMA] Catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 19:
</div>
</div>
<div class="pdbe-citations 5ioq" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5ioq" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Thymidylate synthase 3D structures|Thymidylate synthase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Thema]]
+
[[Category: Large Structures]]
-
[[Category: Bernard, S M]]
+
[[Category: Thermotoga maritima MSB8]]
-
[[Category: Smith, J L]]
+
[[Category: Bernard SM]]
-
[[Category: Stull, F W]]
+
[[Category: Smith JL]]
-
[[Category: Fad-dependent]]
+
[[Category: Stull FW]]
-
[[Category: Nucleotide biosynthesis]]
+
-
[[Category: Reductive methylation]]
+
-
[[Category: Transferase]]
+

Current revision

Flavin-dependent thymidylate synthase in complex with FAD and deoxyuridine

PDB ID 5ioq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools