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2dfy

From Proteopedia

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==Crystal structure of a cyclized protein fusion of LMO4 LIM domains 1 and 2 with the LIM interacting domain of LDB1==
==Crystal structure of a cyclized protein fusion of LMO4 LIM domains 1 and 2 with the LIM interacting domain of LDB1==
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<StructureSection load='2dfy' size='340' side='right' caption='[[2dfy]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
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<StructureSection load='2dfy' size='340' side='right'caption='[[2dfy]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[2dfy]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DFY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DFY FirstGlance]. <br>
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<table><tr><td colspan='2'>[[2dfy]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DFY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DFY FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dfy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dfy OCA], [http://pdbe.org/2dfy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2dfy RCSB], [http://www.ebi.ac.uk/pdbsum/2dfy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2dfy ProSAT]</span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dfy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dfy OCA], [https://pdbe.org/2dfy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dfy RCSB], [https://www.ebi.ac.uk/pdbsum/2dfy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dfy ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/LMO4_MOUSE LMO4_MOUSE]] Probable transcriptional factor.
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[https://www.uniprot.org/uniprot/LMO4_MOUSE LMO4_MOUSE] Probable transcriptional factor.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/df/2dfy_consurf.spt"</scriptWhenChecked>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/df/2dfy_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Lk3 transgenic mice]]
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[[Category: Large Structures]]
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[[Category: Collyer, C A]]
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[[Category: Mus musculus]]
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[[Category: Graham, S C]]
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[[Category: Collyer CA]]
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[[Category: Guss, J M]]
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[[Category: Graham SC]]
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[[Category: Jeffries, C M.J]]
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[[Category: Guss JM]]
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[[Category: Matthews, J M]]
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[[Category: Jeffries CMJ]]
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[[Category: Circular protein]]
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[[Category: Matthews JM]]
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[[Category: Lim domain]]
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[[Category: Lim only protein]]
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[[Category: Transcription]]
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[[Category: Zinc finger]]
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Current revision

Crystal structure of a cyclized protein fusion of LMO4 LIM domains 1 and 2 with the LIM interacting domain of LDB1

PDB ID 2dfy

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