5akm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:11, 10 January 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==THE CRYSTAL STRUCTURE OF I-DMOI G20S IN COMPLEX WITH ITS TARGET DNA IN THE PRESENCE OF 2MM MG==
==THE CRYSTAL STRUCTURE OF I-DMOI G20S IN COMPLEX WITH ITS TARGET DNA IN THE PRESENCE OF 2MM MG==
-
<StructureSection load='5akm' size='340' side='right' caption='[[5akm]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
+
<StructureSection load='5akm' size='340' side='right'caption='[[5akm]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5akm]] is a 15 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AKM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5AKM FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5akm]] is a 15 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfurococcus_mucosus Desulfurococcus mucosus] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AKM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5AKM FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5ak9|5ak9]], [[5akf|5akf]], [[5akn|5akn]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5akm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5akm OCA], [http://pdbe.org/5akm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5akm RCSB], [http://www.ebi.ac.uk/pdbsum/5akm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5akm ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5akm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5akm OCA], [https://pdbe.org/5akm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5akm RCSB], [https://www.ebi.ac.uk/pdbsum/5akm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5akm ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/DMO1_DESMO DMO1_DESMO]] Endonuclease involved in intron homing. Recognizes a recognizes up to 20 bp of DNA in the 23S rRNA gene intron. It has a slow turnover rate and cuts the coding strand with a slight preference over the non-coding strand.
+
[https://www.uniprot.org/uniprot/DMO1_DESMO DMO1_DESMO] Endonuclease involved in intron homing. Recognizes a recognizes up to 20 bp of DNA in the 23S rRNA gene intron. It has a slow turnover rate and cuts the coding strand with a slight preference over the non-coding strand.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 19:
</div>
</div>
<div class="pdbe-citations 5akm" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5akm" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Endonuclease 3D structures|Endonuclease 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Abramo, M D]]
+
[[Category: Desulfurococcus mucosus]]
-
[[Category: Marcaida, M J]]
+
[[Category: Large Structures]]
-
[[Category: Marenchino, M]]
+
[[Category: Synthetic construct]]
-
[[Category: Molina, R]]
+
[[Category: D'Abramo M]]
-
[[Category: Montoya, G]]
+
[[Category: Marcaida MJ]]
-
[[Category: Prieto, J]]
+
[[Category: Marenchino M]]
-
[[Category: Redondo, P]]
+
[[Category: Molina R]]
-
[[Category: Gene targeting]]
+
[[Category: Montoya G]]
-
[[Category: Genetic]]
+
[[Category: Prieto J]]
-
[[Category: Homing endonuclease]]
+
[[Category: Redondo P]]
-
[[Category: Hydrolase]]
+
-
[[Category: Protein-dna interaction]]
+
-
[[Category: X-ray crystallography]]
+

Current revision

THE CRYSTAL STRUCTURE OF I-DMOI G20S IN COMPLEX WITH ITS TARGET DNA IN THE PRESENCE OF 2MM MG

PDB ID 5akm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools