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5lu4

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Current revision (18:49, 18 October 2023) (edit) (undo)
 
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==C4-type pyruvate phosphate dikinase: conformational intermediate of central domain in the swiveling mechanism==
==C4-type pyruvate phosphate dikinase: conformational intermediate of central domain in the swiveling mechanism==
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<StructureSection load='5lu4' size='340' side='right' caption='[[5lu4]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
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<StructureSection load='5lu4' size='340' side='right'caption='[[5lu4]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5lu4]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clustered_yellowtops Clustered yellowtops]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LU4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LU4 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5lu4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Flaveria_trinervia Flaveria trinervia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LU4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5LU4 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PPDK, PDK ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4227 Clustered yellowtops])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pyruvate,_phosphate_dikinase Pyruvate, phosphate dikinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.9.1 2.7.9.1] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5lu4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lu4 OCA], [https://pdbe.org/5lu4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5lu4 RCSB], [https://www.ebi.ac.uk/pdbsum/5lu4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5lu4 ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5lu4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lu4 OCA], [http://pdbe.org/5lu4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lu4 RCSB], [http://www.ebi.ac.uk/pdbsum/5lu4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lu4 ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/PPDK_FLATR PPDK_FLATR]] Formation of phosphoenolpyruvate, which is the primary acceptor of CO(2) in C4 and some Crassulacean acid metabolism plants.
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[https://www.uniprot.org/uniprot/PPDK_FLATR PPDK_FLATR] Formation of phosphoenolpyruvate, which is the primary acceptor of CO(2) in C4 and some Crassulacean acid metabolism plants.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
</div>
<div class="pdbe-citations 5lu4" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5lu4" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Pyruvate phosphate dikinase|Pyruvate phosphate dikinase]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Clustered yellowtops]]
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[[Category: Flaveria trinervia]]
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[[Category: Pyruvate, phosphate dikinase]]
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[[Category: Large Structures]]
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[[Category: Groth, G]]
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[[Category: Groth G]]
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[[Category: Hoeppner, A]]
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[[Category: Hoeppner A]]
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[[Category: Minges, A]]
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[[Category: Minges A]]
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[[Category: Conformational transition]]
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[[Category: Nucleotide binding]]
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[[Category: Phosphotransferase]]
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[[Category: Swiveling mechanism]]
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[[Category: Transferase]]
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Current revision

C4-type pyruvate phosphate dikinase: conformational intermediate of central domain in the swiveling mechanism

PDB ID 5lu4

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