2ayt

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[[Image:2ayt.gif|left|200px]]
 
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{{Structure
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==The crystal structure of a protein disulfide oxidoreductase from aquifex aeolicus==
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|PDB= 2ayt |SIZE=350|CAPTION= <scene name='initialview01'>2ayt</scene>, resolution 2.40&Aring;
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<StructureSection load='2ayt' size='340' side='right'caption='[[2ayt]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
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<table><tr><td colspan='2'>[[2ayt]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AYT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AYT FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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|GENE=
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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|DOMAIN=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ayt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ayt OCA], [https://pdbe.org/2ayt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ayt RCSB], [https://www.ebi.ac.uk/pdbsum/2ayt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ayt ProSAT]</span></td></tr>
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|RELATEDENTRY=[[1a8l|1A8L]]
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</table>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ayt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ayt OCA], [http://www.ebi.ac.uk/pdbsum/2ayt PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2ayt RCSB]</span>
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== Function ==
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}}
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[https://www.uniprot.org/uniprot/O66753_AQUAE O66753_AQUAE]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ay/2ayt_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ayt ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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A potential role in disulfide bond formation in the intracellular proteins of thermophilic organisms has recently been attributed to a new family of protein disulfide isomerase (PDI)-like proteins. Members of this family are characterized by a molecular mass of about 26kDa and by two Trx folds, each comprising a CXXC active site motif. We report on the functional and structural characterization of a new member of this family, which was isolated from the thermophilic bacterium Aquifex aeolicus (AaPDO). Functional studies have revealed the high catalytic efficiency of this enzyme in reducing, oxidizing and isomerizing disulfide bridges. Site-directed mutagenesis experiments have suggested that its two active sites have similar functional properties, i.e. that each of them imparts partial activity to the enzyme. This similarity was confirmed by the analysis of the enzyme crystal structure, which points to similar geometrical parameters and solvent accessibilities for the two active sites. The results demonstrated that AaPDO is the most PDI-like of all prokaryotic proteins so far known. Thus, further experimental studies on this enzyme are likely to provide important information on the eukaryotic homologue.
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'''The crystal structure of a protein disulfide oxidoreductase from aquifex aeolicus'''
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Insights on a new PDI-like family: structural and functional analysis of a protein disulfide oxidoreductase from the bacterium Aquifex aeolicus.,Pedone E, D'Ambrosio K, De Simone G, Rossi M, Pedone C, Bartolucci S J Mol Biol. 2006 Feb 10;356(1):155-64. Epub 2005 Dec 1. PMID:16364362<ref>PMID:16364362</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2ayt" style="background-color:#fffaf0;"></div>
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==Overview==
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==See Also==
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A potential role in disulfide bond formation in the intracellular proteins of thermophilic organisms has recently been attributed to a new family of protein disulfide isomerase (PDI)-like proteins. Members of this family are characterized by a molecular mass of about 26kDa and by two Trx folds, each comprising a CXXC active site motif. We report on the functional and structural characterization of a new member of this family, which was isolated from the thermophilic bacterium Aquifex aeolicus (AaPDO). Functional studies have revealed the high catalytic efficiency of this enzyme in reducing, oxidizing and isomerizing disulfide bridges. Site-directed mutagenesis experiments have suggested that its two active sites have similar functional properties, i.e. that each of them imparts partial activity to the enzyme. This similarity was confirmed by the analysis of the enzyme crystal structure, which points to similar geometrical parameters and solvent accessibilities for the two active sites. The results demonstrated that AaPDO is the most PDI-like of all prokaryotic proteins so far known. Thus, further experimental studies on this enzyme are likely to provide important information on the eukaryotic homologue.
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*[[Protein disulfide oxidoreductase 3D structures|Protein disulfide oxidoreductase 3D structures]]
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== References ==
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==About this Structure==
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<references/>
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2AYT is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AYT OCA].
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__TOC__
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</StructureSection>
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==Reference==
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Insights on a new PDI-like family: structural and functional analysis of a protein disulfide oxidoreductase from the bacterium Aquifex aeolicus., Pedone E, D'Ambrosio K, De Simone G, Rossi M, Pedone C, Bartolucci S, J Mol Biol. 2006 Feb 10;356(1):155-64. Epub 2005 Dec 1. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16364362 16364362]
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[[Category: Aquifex aeolicus]]
[[Category: Aquifex aeolicus]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Ambrosio, K D.]]
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[[Category: Bartolucci S]]
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[[Category: Bartolucci, S.]]
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[[Category: D'Ambrosio K]]
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[[Category: Pedone, C.]]
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[[Category: De Simone G]]
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[[Category: Pedone, E.]]
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[[Category: Pedone C]]
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[[Category: Rossi, M.]]
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[[Category: Pedone E]]
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[[Category: Simone, G De.]]
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[[Category: Rossi M]]
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[[Category: glutaredoxin]]
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[[Category: protein disulfide oxidoreductase]]
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[[Category: thioredoxin fold]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:59:09 2008''
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Current revision

The crystal structure of a protein disulfide oxidoreductase from aquifex aeolicus

PDB ID 2ayt

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